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Reviewed, UniProtKB/Swiss-Prot Q13557 (KCC2D_HUMAN)

Last modified July 7, 2009. Version 101. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (7) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Calcium/calmodulin-dependent protein kinase type II delta chain
      Short name=CaM-kinase II delta chain
      Short name=CaM kinase II subunit delta
      Short name=CaMK-II subunit delta
    EC=2.7.11.17
Gene names
Name: CAMK2D
Synonyms: CAMKD
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length499 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

CaM-kinase II (CAMK2) is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release.

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Enzyme regulation

Autophosphorylation of CAMK2 plays an important role in the regulation of the kinase activity.

Subunit structure

CAMK2 is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits.

Tissue specificity

Expressed in cardiac muscle and skeletal muscle. Isoform Delta 3, isoform Delta 2, isoform Delta 8 and isoform Delta 9 are expressed in cardiac muscle. Isoform Delta 11 is expressed in skeletal muscle. Ref.1

Miscellaneous

Expression of CAMK2D is significantly increased in patients suffering from dilated cardiomyopathy.

Sequence similarities

Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.

Contains 1 protein kinase domain.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

CAMK2AQ9UQM71EBI-351018,EBI-1383687

Alternative products

This entry describes 9 isoforms produced by alternative splicing. [Align] [Select]
Isoform Delta 2 (identifier: Q13557-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform Delta 3 (identifier: Q13557-3)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → KRKSSSSVQMM
Isoform Delta 4 (identifier: Q13557-4)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → INNKANVVTSPKENIPTPAL
Isoform Delta 6 (identifier: Q13557-8)

The sequence of this isoform differs from the canonical sequence as follows:
     479-499: Missing.
Isoform Delta 7 (identifier: Q13557-9)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → KRKSSSSVQMM
     479-499: Missing.
Isoform Delta 8 (identifier: Q13557-5)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → INNKANVVTSPKENIPTPAL
     479-499: Missing.
Isoform Delta 9 (identifier: Q13557-6)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → EPQTTVIHNPDGNK
Isoform Delta 10 (identifier: Q13557-10)

The sequence of this isoform differs from the canonical sequence as follows:
     328-328: K → EPQTTVIHNPDGNK
     479-499: Missing.
Isoform Delta 11 (identifier: Q13557-11)

The sequence of this isoform differs from the canonical sequence as follows:
     316-316: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 499499Calcium/calmodulin-dependent protein kinase type II delta chain
PRO_0000086099

Regions

Domain14 – 272259Protein kinase
Nucleotide binding20 – 289ATP By similarity
Region291 – 30111Calmodulin-binding By similarity

Sites

Active site1361Proton acceptor By similarity
Binding site431ATP By similarity

Amino acid modifications

Modified residue31Phosphoserine Ref.9
Modified residue2311Phosphotyrosine By similarity
Modified residue2871Phosphothreonine By similarity
Modified residue3151Phosphoserine Ref.9 Ref.8
Modified residue3191Phosphoserine Ref.9 Ref.8
Modified residue3301Phosphoserine Ref.10
Modified residue3311Phosphothreonine Ref.9 Ref.10
Modified residue3331Phosphoserine Ref.10
Modified residue3371Phosphothreonine Ref.8 Ref.10 Ref.7
Modified residue4721Phosphoserine Ref.9

Natural variations

Alternative sequence3161Missing in isoform Delta 11.
VSP_023095
Alternative sequence3281K → KRKSSSSVQMM in isoform Delta 3 and isoform Delta 7.
VSP_023096
Alternative sequence3281K → INNKANVVTSPKENIPTPAL in isoform Delta 4 and isoform Delta 8.
VSP_023097
Alternative sequence3281K → EPQTTVIHNPDGNK in isoform Delta 9 and isoform Delta 10.
VSP_023098
Alternative sequence479 – 49921Missing in isoform Delta 6, isoform Delta 7, isoform Delta 8 and isoform Delta 10.
VSP_023099
Natural variant1671D → E Ref.12
VAR_040602
Natural variant4631Q → E: dbSNP rs1053668.
VAR_028196
Natural variant4931T → I: dbSNP rs35765784. Ref.12
VAR_040603

Experimental info

Sequence conflict391E → G in AAD20442. Ref.1
Sequence conflict2721I → T in AAX88806. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Isoform Delta 2 [UniParc].

Last modified October 17, 2006. Version 3.
Checksum: 62999FBAB98120CE

FASTA49956,369
        10         20         30         40         50         60 
MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL SARDHQKLER 

        70         80         90        100        110        120 
EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 

       130        140        150        160        170        180 
LESVNHCHLN GIVHRDLKPE NLLLASKSKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 

       190        200        210        220        230        240 
LSPEVLRKDP YGKPVDMWAC GVILYILLVG YPPFWDEDQH RLYQQIKAGA YDFPSPEWDT 

       250        260        270        280        290        300 
VTPEAKDLIN KMLTINPAKR ITASEALKHP WICQRSTVAS MMHRQETVDC LKKFNARRKL 

       310        320        330        340        350        360 
KGAILTTMLA TRNFSAAKSL LKKPDGVKES TESSNTTIED EDVKARKQEI IKVTEQLIEA 

       370        380        390        400        410        420 
INNGDFEAYT KICDPGLTAF EPEALGNLVE GMDFHRFYFE NALSKSNKPI HTIILNPHVH 

       430        440        450        460        470        480 
LVGDDAACIA YIRLTQYMDG SGMPKTMQSE ETRVWHRRDG KWQNVHFHRS GSPTVPIKPP 

       490 
CIPNGKENFS GGTSLWQNI 

« Hide

Isoform Delta 3.

Checksum: 425C1B8126CCBA0B
Show »

FASTA50957,492
Isoform Delta 4.

Checksum: 1717E28C7F67779E
Show »

FASTA51858,344
Isoform Delta 6.

Checksum: 571DA27C914E4F7E
Show »

FASTA47854,128
Isoform Delta 7.

Checksum: 452259A6C192377F
Show »

FASTA48855,250
Isoform Delta 8.

Checksum: 8E82CAC892EBF535
Show »

FASTA49756,102
Isoform Delta 9.

Checksum: 0705186B9AD08758
Show »

FASTA51257,773
Isoform Delta 10.

Checksum: B103C9221F88F822
Show »

FASTA49155,531
Isoform Delta 11.

Checksum: 671917C787E95FDD
Show »

FASTA49856,298

References

« Hide 'large scale' references
[1]"Identification and expression of delta-isoforms of the multifunctional Ca2+/calmodulin-dependent protein kinase in failing and nonfailing human myocardium."
Hoch B., Meyer R., Hetzer R., Krause E.-G., Karczewski P.
Circ. Res. 84:713-721(1999) [PubMed: 10189359] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM DELTA 2), ALTERNATIVE SPLICING, TISSUE SPECIFICITY.
Tissue: Myocardium.
[2]Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM DELTA 10).
Tissue: Brain.
[3]Zhou G., Nong W., Li H., Ke R., Li M., Zheng Z., Zhong G., Shen C., Liang M., Lin L., Yang S.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM DELTA 7).
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM DELTA 6).
Tissue: Brain.
[5]"Cloning and quantitative determination of the human Ca2+/calmodulin-dependent protein kinase II (CaMK II) isoforms in human beta cells."
Rochlitz H., Voigt A., Lankat-Buttgereit B., Goeke B., Heimberg H., Nauck M.A., Schiemann U., Schatz H., Pfeiffer A.F.
Diabetologia 43:465-473(2000) [PubMed: 10819240] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-243, ALTERNATIVE SPLICING.
Tissue: Insulinoma.
[6]"Identification of novel human tumor cell-specific CaMK-II variants."
Tombes R.M., Krystal G.W.
Biochim. Biophys. Acta 1355:281-292(1997) [PubMed: 9060999] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 302-417, ALTERNATIVE SPLICING.
[7]"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.
Cell 127:635-648(2006) [PubMed: 17081983] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-337, MASS SPECTROMETRY.
Tissue: Epithelium.
[8]"Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry."
Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R., Keri G., Wehland J., Daub H.
Mol. Cell. Proteomics 6:537-547(2007) [PubMed: 17192257] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-315; SER-319 AND THR-337, MASS SPECTROMETRY.
[9]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-3; SER-315; SER-319; THR-331 AND SER-472, MASS SPECTROMETRY.
[10]"Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography."
Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J.
Proteomics 8:1346-1361(2008) [PubMed: 18318008] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-330; THR-331; SER-333 AND THR-337, MASS SPECTROMETRY.
Tissue: Liver.
[11]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[12]"Patterns of somatic mutation in human cancer genomes."
Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. expand/collapse author list , Choudhury B., Clements J., Cole J., Dicks E., Forbes S., Gray K., Halliday K., Harrison R., Hills K., Hinton J., Jenkinson A., Jones D., Menzies A., Mironenko T., Perry J., Raine K., Richardson D., Shepherd R., Small A., Tofts C., Varian J., Webb T., West S., Widaa S., Yates A., Cahill D.P., Louis D.N., Goldstraw P., Nicholson A.G., Brasseur F., Looijenga L., Weber B.L., Chiew Y.-E., DeFazio A., Greaves M.F., Green A.R., Campbell P., Birney E., Easton D.F., Chenevix-Trench G., Tan M.-H., Khoo S.K., Teh B.T., Yuen S.T., Leung S.Y., Wooster R., Futreal P.A., Stratton M.R.
Nature 446:153-158(2007) [PubMed: 17344846] [Abstract]
Cited for: VARIANTS [LARGE SCALE ANALYSIS] GLU-167 AND ILE-493.
+Additional computationally mapped references.

Cross-references

Sequence databases

AF071569 mRNA. Translation: AAD20442.1.
AB209288 mRNA. Translation: BAD92525.1. Different initiation.
AY987011 mRNA. Translation: AAX88806.1.
BC032784 mRNA. Translation: AAH32784.1.
AJ252239 mRNA. Translation: CAB65123.1.
U50361 mRNA. Translation: AAB16866.1.
IPIIPI00172636.
IPI00430291.
IPI00827573.
IPI00827606.
IPI00827625.
IPI00827717.
IPI00828081.
IPI00828139.
IPI00828178.
RefSeqNP_001212.2.
NP_742112.1.
NP_742113.1.
NP_742125.1.
NP_742126.1.
NP_742127.1.
UniGeneHs.144114

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
2VN9X-ray2.30A/B11-309[»]
2W2CX-ray2.70A/B/C/D/E/F/G/H/I/J/K/L/M/N334-475[»]
2WELX-ray1.90A11-335[»]
SMRQ13557. Positions 336-474.
ModBaseSearch...

Protein-protein interaction databases

IntActQ13557. 11 interactions.

PTM databases

PhosphoSiteQ13557.

Proteomic databases

PRIDEQ13557.

Genome annotation databases

EnsemblENSG00000145349. Homo sapiens. [Contig view]
GeneID817.
KEGGhsa:817.
UCSCuc003ibi.1. human.
uc003ibk.1. human.
uc003ibm.1. human.
uc003ibn.1. human.

Organism-specific databases

GeneCardsGC04M114655.
HGNCHGNC:1462. CAMK2D.
MIM607708. gene.
PharmGKBPA92.
GenAtlasSearch...

Phylogenomic databases

HOGENOMQ13557.
HOVERGENQ13557.
OMAQ13557. QYMDGGG.

Enzyme and pathway databases

BRENDA2.7.11.17. 247.
Pathway_Interaction_DBifngpathway. IFN-gamma pathway.

Gene expression databases

ArrayExpressQ13557.
BgeeQ13557.
CleanExHS_CAMK2D.
GermOnlineENSG00000145349. Homo sapiens.

Family and domain databases

InterProIPR015742. Ca/calmodulin-dep_kinase.
IPR013543. Ca/calmodulin-dep_kinase-assoc.
IPR000719. Prot_kinase_core.
IPR017441. Protein_kinase_ATP_BS.
IPR017442. Se/Thr_pkinase-rel.
IPR008271. Ser_thr_pkin_AS.
IPR002290. Ser_thr_pkinase.
[Graphical view]
PANTHERPTHR22982:SF64. CaMKII. 1 hit.
PfamPF08332. CaMKII_AD. 1 hit.
PF00069. Pkinase. 1 hit.
[Graphical view]
ProDomPD000001. Prot_kinase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio3330.
SOURCESearch...

Entry information

Entry nameKCC2D_HUMAN
AccessionPrimary (citable) accession number: Q13557
Secondary accession number(s): Q52PK4 expand/collapse secondary AC list , Q59G21, Q8N553, Q9UGH6, Q9UQE9
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 17, 2006
Last modified: July 7, 2009
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 4

Human chromosome 4: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Human and mouse protein kinases

Human and mouse protein kinases: classification and index

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents