ID NAB1_HUMAN Reviewed; 487 AA. AC Q13506; O75383; O75384; Q6GTU1; Q9UEV1; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 07-MAR-2006, sequence version 2. DT 27-MAR-2024, entry version 180. DE RecName: Full=NGFI-A-binding protein 1; DE AltName: Full=EGR-1-binding protein 1; DE AltName: Full=Transcriptional regulatory protein p54; GN Name=NAB1; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM LONG). RC TISSUE=Brain; RX PubMed=8668170; DOI=10.1128/mcb.16.7.3545; RA Svaren J., Sevetson B.R., Apel E.D., Zimonjic D.B., Popescu N.C., RA Milbrandt J.; RT "NAB2, a corepressor of NGFI-A (Egr-1) and Krox20, is induced by RT proliferative and differentiative stimuli."; RL Mol. Cell. Biol. 16:3545-3553(1996). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS LONG AND SHORT). RA Fan W.; RL Submitted (JAN-1998) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15815621; DOI=10.1038/nature03466; RA Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., RA Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., RA Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., RA Du H., Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., RA Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., RA Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., RA Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., RA Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., RA Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., RA McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., RA Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., RA Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., RA Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., RA Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., RA Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., RA Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., RA Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., RA Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., RA Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., RA Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., RA Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., RA Wilson R.K.; RT "Generation and annotation of the DNA sequences of human chromosomes 2 and RT 4."; RL Nature 434:724-731(2005). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Ovary; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-103. RA Cao J., Fan W.; RT "Cloning and characterization of the 5' promoter region of human p54, a RT transcriptional repressor."; RL Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases. RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-328, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=17081983; DOI=10.1016/j.cell.2006.09.026; RA Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.; RT "Global, in vivo, and site-specific phosphorylation dynamics in signaling RT networks."; RL Cell 127:635-648(2006). RN [7] RP SUMOYLATION AT LYS-333 AND LYS-480 BY EGR2. RX PubMed=21836637; DOI=10.1038/embor.2011.152; RA Garcia-Gutierrez P., Juarez-Vicente F., Gallardo-Chamizo F., Charnay P., RA Garcia-Dominguez M.; RT "The transcription factor Krox20 is an E3 ligase that sumoylates its Nab RT coregulators."; RL EMBO Rep. 12:1018-1023(2011). RN [8] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21406692; DOI=10.1126/scisignal.2001570; RA Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., RA Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.; RT "System-wide temporal characterization of the proteome and phosphoproteome RT of human embryonic stem cell differentiation."; RL Sci. Signal. 4:RS3-RS3(2011). RN [9] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [10] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014; RA Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., RA Ye M., Zou H.; RT "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver RT phosphoproteome."; RL J. Proteomics 96:253-262(2014). RN [11] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-333; LYS-355 AND LYS-480, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=25218447; DOI=10.1038/nsmb.2890; RA Hendriks I.A., D'Souza R.C., Yang B., Verlaan-de Vries M., Mann M., RA Vertegaal A.C.; RT "Uncovering global SUMOylation signaling networks in a site-specific RT manner."; RL Nat. Struct. Mol. Biol. 21:927-936(2014). RN [12] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-129; LYS-333 AND LYS-480, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=25772364; DOI=10.1016/j.celrep.2015.02.033; RA Hendriks I.A., Treffers L.W., Verlaan-de Vries M., Olsen J.V., RA Vertegaal A.C.; RT "SUMO-2 orchestrates chromatin modifiers in response to DNA damage."; RL Cell Rep. 10:1778-1791(2015). RN [13] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-333, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=25755297; DOI=10.1074/mcp.o114.044792; RA Xiao Z., Chang J.G., Hendriks I.A., Sigurdsson J.O., Olsen J.V., RA Vertegaal A.C.; RT "System-wide analysis of SUMOylation dynamics in response to replication RT stress reveals novel small ubiquitin-like modified target proteins and RT acceptor lysines relevant for genome stability."; RL Mol. Cell. Proteomics 14:1419-1434(2015). RN [14] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-126; LYS-129; LYS-143; LYS-212; RP LYS-333; LYS-355; LYS-369; LYS-373; LYS-454; LYS-465; LYS-477 AND LYS-480, RP AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=28112733; DOI=10.1038/nsmb.3366; RA Hendriks I.A., Lyon D., Young C., Jensen L.J., Vertegaal A.C., RA Nielsen M.L.; RT "Site-specific mapping of the human SUMO proteome reveals co-modification RT with phosphorylation."; RL Nat. Struct. Mol. Biol. 24:325-336(2017). RN [15] RP STRUCTURE BY NMR OF 183-317. RG RIKEN structural genomics initiative (RSGI); RT "Solution structure of the NCD2 domain in human transcriptional repressor RT NAB1 protein."; RL Submitted (APR-2008) to the PDB data bank. CC -!- FUNCTION: Acts as a transcriptional repressor for zinc finger CC transcription factors EGR1 and EGR2. {ECO:0000250}. CC -!- SUBUNIT: Homomultimers may associate with EGR1 bound to DNA. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=Long; CC IsoId=Q13506-1; Sequence=Displayed; CC Name=Short; CC IsoId=Q13506-2; Sequence=VSP_003384; CC -!- TISSUE SPECIFICITY: Isoform Short is found in myeloid leukemia cell CC line KG-1. CC -!- DOMAIN: The NAB conserved domain 1 (NCD1) interacts with EGR1 CC inhibitory domain and mediates multimerization. CC -!- DOMAIN: The NAB conserved domain 2 (NCD2) is necessary for CC transcriptional repression. CC -!- SIMILARITY: Belongs to the NAB family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; U47007; AAC50588.1; -; mRNA. DR EMBL; AF045451; AAC25085.1; -; mRNA. DR EMBL; AF045452; AAC25086.1; -; mRNA. DR EMBL; AC006460; AAX93076.1; -; Genomic_DNA. DR EMBL; BC035724; AAH35724.1; -; mRNA. DR EMBL; AF052744; AAC28325.1; -; Genomic_DNA. DR CCDS; CCDS2307.1; -. [Q13506-1] DR RefSeq; NP_001308241.1; NM_001321312.1. [Q13506-1] DR RefSeq; NP_001308242.1; NM_001321313.1. [Q13506-1] DR RefSeq; NP_001308243.1; NM_001321314.1. DR RefSeq; NP_001308244.1; NM_001321315.1. DR RefSeq; NP_005957.2; NM_005966.3. [Q13506-1] DR RefSeq; XP_005246639.1; XM_005246582.1. [Q13506-1] DR RefSeq; XP_005246640.1; XM_005246583.1. [Q13506-1] DR RefSeq; XP_011509521.1; XM_011511219.2. [Q13506-1] DR RefSeq; XP_016859659.1; XM_017004170.1. [Q13506-1] DR RefSeq; XP_016859665.1; XM_017004176.1. [Q13506-1] DR PDB; 2YUF; NMR; -; A=189-317. DR PDBsum; 2YUF; -. DR AlphaFoldDB; Q13506; -. DR SMR; Q13506; -. DR BioGRID; 110746; 27. DR IntAct; Q13506; 10. DR STRING; 9606.ENSP00000336894; -. DR GlyGen; Q13506; 3 sites, 1 O-linked glycan (3 sites). DR iPTMnet; Q13506; -. DR PhosphoSitePlus; Q13506; -. DR BioMuta; NAB1; -. DR DMDM; 90109928; -. DR EPD; Q13506; -. DR jPOST; Q13506; -. DR MassIVE; Q13506; -. DR MaxQB; Q13506; -. DR PaxDb; 9606-ENSP00000336894; -. DR PeptideAtlas; Q13506; -. DR ProteomicsDB; 59502; -. [Q13506-1] DR ProteomicsDB; 59503; -. [Q13506-2] DR Pumba; Q13506; -. DR Antibodypedia; 1209; 385 antibodies from 27 providers. DR DNASU; 4664; -. DR Ensembl; ENST00000337386.10; ENSP00000336894.5; ENSG00000138386.17. [Q13506-1] DR Ensembl; ENST00000409581.5; ENSP00000387089.1; ENSG00000138386.17. [Q13506-1] DR GeneID; 4664; -. DR KEGG; hsa:4664; -. DR MANE-Select; ENST00000337386.10; ENSP00000336894.5; NM_005966.4; NP_005957.2. DR UCSC; uc002usb.4; human. [Q13506-1] DR AGR; HGNC:7626; -. DR CTD; 4664; -. DR DisGeNET; 4664; -. DR GeneCards; NAB1; -. DR HGNC; HGNC:7626; NAB1. DR HPA; ENSG00000138386; Low tissue specificity. DR MIM; 600800; gene. DR neXtProt; NX_Q13506; -. DR OpenTargets; ENSG00000138386; -. DR PharmGKB; PA31431; -. DR VEuPathDB; HostDB:ENSG00000138386; -. DR eggNOG; KOG3835; Eukaryota. DR GeneTree; ENSGT00390000006330; -. DR HOGENOM; CLU_561344_0_0_1; -. DR InParanoid; Q13506; -. DR OMA; SAGCYRQ; -. DR OrthoDB; 4181992at2759; -. DR PhylomeDB; Q13506; -. DR TreeFam; TF315501; -. DR PathwayCommons; Q13506; -. DR Reactome; R-HSA-9031628; NGF-stimulated transcription. DR Reactome; R-HSA-9619665; EGR2 and SOX10-mediated initiation of Schwann cell myelination. DR SignaLink; Q13506; -. DR BioGRID-ORCS; 4664; 13 hits in 1156 CRISPR screens. DR ChiTaRS; NAB1; human. DR EvolutionaryTrace; Q13506; -. DR GeneWiki; NAB1; -. DR GenomeRNAi; 4664; -. DR Pharos; Q13506; Tbio. DR PRO; PR:Q13506; -. DR Proteomes; UP000005640; Chromosome 2. DR RNAct; Q13506; Protein. DR Bgee; ENSG00000138386; Expressed in ganglionic eminence and 209 other cell types or tissues. DR ExpressionAtlas; Q13506; baseline and differential. DR GO; GO:0005654; C:nucleoplasm; TAS:Reactome. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central. DR GO; GO:0001958; P:endochondral ossification; IEA:Ensembl. DR GO; GO:0042552; P:myelination; IEA:Ensembl. DR GO; GO:0045892; P:negative regulation of DNA-templated transcription; NAS:UniProtKB. DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central. DR GO; GO:0045682; P:regulation of epidermis development; IEA:Ensembl. DR GO; GO:0014037; P:Schwann cell differentiation; IEA:Ensembl. DR Gene3D; 1.20.120.2010; NAB conserved domain 2; 1. DR InterPro; IPR006986; Nab1_C. DR InterPro; IPR006989; NAB_co-repressor_dom. DR InterPro; IPR039040; NAB_fam. DR InterPro; IPR006988; Nab_N. DR InterPro; IPR038398; NCD2_sf. DR PANTHER; PTHR12623; NGFI-A BINDING PROTEIN; 1. DR PANTHER; PTHR12623:SF9; NGFI-A-BINDING PROTEIN 1; 1. DR Pfam; PF04902; Nab1; 1. DR Pfam; PF04904; NCD1; 1. DR Pfam; PF04905; NCD2; 1. DR Genevisible; Q13506; HS. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; Isopeptide bond; Nucleus; KW Phosphoprotein; Reference proteome; Repressor; Transcription; KW Transcription regulation; Ubl conjugation. FT CHAIN 1..486 FT /note="NGFI-A-binding protein 1" FT /id="PRO_0000077038" FT REGION 4..82 FT /note="NCD1" FT REGION 162..188 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 221..310 FT /note="NCD2" FT REGION 307..338 FT /note="Necessary for nuclear localization" FT /evidence="ECO:0000250" FT REGION 399..434 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 400..432 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 172 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q61122" FT MOD_RES 183 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q61122" FT MOD_RES 328 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17081983" FT MOD_RES 407 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q61122" FT CROSSLNK 126 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 129 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:25772364, FT ECO:0007744|PubMed:28112733" FT CROSSLNK 143 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 212 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 333 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO1); alternate" FT /evidence="ECO:0000269|PubMed:21836637" FT CROSSLNK 333 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2); alternate" FT /evidence="ECO:0007744|PubMed:25218447, FT ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, FT ECO:0007744|PubMed:28112733" FT CROSSLNK 355 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:25218447, FT ECO:0007744|PubMed:28112733" FT CROSSLNK 369 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 373 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 454 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 465 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 477 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 480 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO1); alternate" FT /evidence="ECO:0000269|PubMed:21836637" FT CROSSLNK 480 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2); alternate" FT /evidence="ECO:0007744|PubMed:25218447, FT ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733" FT VAR_SEQ 336..364 FT /note="Missing (in isoform Short)" FT /evidence="ECO:0000303|Ref.2" FT /id="VSP_003384" FT CONFLICT 129 FT /note="K -> N (in Ref. 1; AAC50588)" FT /evidence="ECO:0000305" FT CONFLICT 366 FT /note="Missing (in Ref. 1; AAC50588)" FT /evidence="ECO:0000305" FT HELIX 193..209 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 215..224 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 227..232 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 234..237 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 243..252 FT /evidence="ECO:0007829|PDB:2YUF" FT STRAND 255..257 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 272..286 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 288..291 FT /evidence="ECO:0007829|PDB:2YUF" FT HELIX 294..310 FT /evidence="ECO:0007829|PDB:2YUF" SQ SEQUENCE 487 AA; 54401 MW; 385B16391D670059 CRC64; MAAALPRTLG ELQLYRILQK ANLLSYFDAF IQQGGDDVQQ LCEAGEEEFL EIMALVGMAS KPLHVRRLQK ALRDWVTNPG LFNQPLTSLP VSSIPIYKLP EGSPTWLGIS CSSYERSSNA REPHLKIPKC AATTCVQSLG QGKSDVVGSL ALQSVGESRL WQGHHATESE HSLSPADLGS PASPKESSEA LDAAAALSVA ECVERMAPTL PKSDLNEVKE LLKTNKKLAK MIGHIFEMND DDPHKEEEIR KYSAIYGRFD SKRKDGKHLT LHELTVNEAA AQLCVKDNAL LTRRDELFAL ARQISREVTY KYTYRTTKSK CGERDELSPK RIKVEDGFPD FQDSVQTLFQ QARAKSEELA ALSSQQPEKV MAKQMEFLCN QAGYERLQHA ERRLSAGLYR QSSEEHSPNG LTSDNSDGQG ERPLNLRMPN LQNRQPHHFV VDGELSRLYP SEAKSHSSES LGILKDYPHS AFTLEKKVIK TEPEDSR //