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Protein

Mucosal addressin cell adhesion molecule 1

Gene

MADCAM1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Cell adhesion leukocyte receptor expressed by mucosal venules, helps to direct lymphocyte traffic into mucosal tissues including the Peyer patches and the intestinal lamina propria. It can bind both integrin alpha-4/beta-7 and L-selectin, regulating both the passage and retention of leukocytes. Isoform 2, lacking the mucin-like domain, may be specialized in supporting integrin alpha-4/beta-7-dependent adhesion strengthening, independent of L-selectin binding.

GO - Molecular functioni

  • integrin binding involved in cell-matrix adhesion Source: UniProtKB

GO - Biological processi

  • aging Source: Ensembl
  • cell adhesion Source: ProtInc
  • cell-matrix adhesion Source: UniProtKB
  • extracellular matrix organization Source: Reactome
  • heterotypic cell-cell adhesion Source: UniProtKB
  • immune response Source: ProtInc
  • integrin-mediated signaling pathway Source: UniProtKB
  • leukocyte tethering or rolling Source: UniProtKB
  • positive regulation of leukocyte migration Source: GO_Central
  • receptor clustering Source: UniProtKB
  • regulation of immune response Source: Reactome
  • signal transduction Source: ProtInc
Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Enzyme and pathway databases

BioCyciZFISH:ENSG00000099866-MONOMER.
ReactomeiR-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-216083. Integrin cell surface interactions.
SignaLinkiQ13477.

Names & Taxonomyi

Protein namesi
Recommended name:
Mucosal addressin cell adhesion molecule 1
Short name:
MAdCAM-1
Short name:
hMAdCAM-1
Gene namesi
Name:MADCAM1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 19

Organism-specific databases

HGNCiHGNC:6765. MADCAM1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini19 – 317ExtracellularSequence analysisAdd BLAST299
Transmembranei318 – 338HelicalSequence analysisAdd BLAST21
Topological domaini339 – 382CytoplasmicSequence analysisAdd BLAST44

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • membrane Source: ProtInc
  • plasma membrane Source: Reactome
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

DisGeNETi8174.
OpenTargetsiENSG00000099866.
PharmGKBiPA30522.

Chemistry databases

ChEMBLiCHEMBL4467.

Polymorphism and mutation databases

BioMutaiMADCAM1.
DMDMi218511712.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_000001485319 – 382Mucosal addressin cell adhesion molecule 1Add BLAST364

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi47 ↔ 94Combined sources3 Publications
Disulfide bondi51 ↔ 98Combined sources3 Publications
Glycosylationi83N-linked (GlcNAc...)Sequence analysis1 Publication1
Disulfide bondi134 ↔ 204Combined sources3 Publications

Post-translational modificationi

The Ser/Thr-rich mucin-like domain may provide possible sites for O-glycosylation.By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ13477.
PeptideAtlasiQ13477.
PRIDEiQ13477.

PTM databases

iPTMnetiQ13477.
PhosphoSitePlusiQ13477.

Expressioni

Tissue specificityi

Highly expressed on high endothelial venules (HEV) and lamina propia venules found in the small intestine, and to a lesser extent in the colon and spleen. Very low levels of expression found in pancreas and brain. Not expressed in the thymus, prostate, ovaries, testis, heart, placenta, lung, liver, skeletal muscle, kidney or peripheral blood leukocytes.2 Publications

Gene expression databases

BgeeiENSG00000099866.
CleanExiHS_MADCAM1.
ExpressionAtlasiQ13477. baseline and differential.
GenevisibleiQ13477. HS.

Interactioni

Subunit structurei

Homodimer.Curated

GO - Molecular functioni

  • integrin binding involved in cell-matrix adhesion Source: UniProtKB

Protein-protein interaction databases

BioGridi113825. 4 interactors.
IntActiQ13477. 1 interactor.
STRINGi9606.ENSP00000215637.

Chemistry databases

BindingDBiQ13477.

Structurei

Secondary structure

1382
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi25 – 30Combined sources6
Beta strandi33 – 38Combined sources6
Beta strandi43 – 49Combined sources7
Beta strandi52 – 54Combined sources3
Beta strandi57 – 62Combined sources6
Turni64 – 67Combined sources4
Beta strandi69 – 83Combined sources15
Helixi86 – 88Combined sources3
Beta strandi90 – 98Combined sources9
Beta strandi101 – 113Combined sources13
Beta strandi116 – 125Combined sources10
Beta strandi131 – 140Combined sources10
Turni144 – 146Combined sources3
Beta strandi147 – 153Combined sources7
Beta strandi167 – 171Combined sources5
Beta strandi175 – 177Combined sources3
Beta strandi180 – 190Combined sources11
Beta strandi200 – 210Combined sources11
Beta strandi213 – 223Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1BQSX-ray2.20A23-231[»]
1GSMX-ray1.90A19-224[»]
4HBQX-ray1.40A/B23-171[»]
A/B180-224[»]
4HC1X-ray2.87A/B23-171[»]
A/B180-224[»]
4HCRX-ray2.30A/B23-225[»]
4HD9X-ray1.70A23-225[»]
ProteinModelPortaliQ13477.
SMRiQ13477.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ13477.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 112Ig-like 1Add BLAST90
Domaini113 – 231Ig-like 2Add BLAST119
Repeati228 – 2311; truncated4
Repeati232 – 23928
Repeati240 – 24738
Repeati248 – 25548
Repeati256 – 26358
Repeati264 – 27168

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni226 – 317Mucin-likeAdd BLAST92
Regioni228 – 2715.5 X 8 AA tandem repeats of [PS]-P-D-T-T-S-[QP]-EAdd BLAST44

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410J133. Eukaryota.
ENOG411140D. LUCA.
GeneTreeiENSGT00510000049549.
HOGENOMiHOG000060103.
HOVERGENiHBG108114.
InParanoidiQ13477.
KOiK06779.
TreeFamiTF337571.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
InterProiIPR015169. Adhes-Ig-like.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF09085. Adhes-Ig_like. 1 hit.
[Graphical view]
ProDomiPD336606. Adhes-Ig-like. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00409. IG. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 2 hits.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Note: Additional isoforms seem to exist.
Isoform 1 (identifier: Q13477-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDFGLALLLA GLLGLLLGQS LQVKPLQVEP PEPVVAVALG ASRQLTCRLA
60 70 80 90 100
CADRGASVQW RGLDTSLGAV QSDTGRSVLT VRNASLSAAG TRVCVGSCGG
110 120 130 140 150
RTFQHTVQLL VYAFPDQLTV SPAALVPGDP EVACTAHKVT PVDPNALSFS
160 170 180 190 200
LLVGGQELEG AQALGPEVQE EEEEPQGDED VLFRVTERWR LPPLGTPVPP
210 220 230 240 250
ALYCQATMRL PGLELSHRQA IPVLHSPTSP EPPDTTSPES PDTTSPESPD
260 270 280 290 300
TTSQEPPDTT SPEPPDKTSP EPAPQQGSTH TPRSPGSTRT RRPEISQAGP
310 320 330 340 350
TQGEVIPTGS SKPAGDQLPA ALWTSSAVLG LLLLALPTYH LWKRCRHLAE
360 370 380
DDTHPPASLR LLPQVSAWAG LRGTGQVGIS PS
Length:382
Mass (Da):40,155
Last modified:December 16, 2008 - v2
Checksum:i9DCA60C30BA61E62
GO
Isoform 2 (identifier: Q13477-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     223-334: VLHSPTSPEP...SSAVLGLLLL → A

Show »
Length:271
Mass (Da):28,705
Checksum:i3613F1F208F9F31D
GO
Isoform 3 (identifier: Q13477-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     223-310: VLHSPTSPEP...TQGEVIPTGS → A

Note: No experimental confirmation available.
Show »
Length:295
Mass (Da):31,109
Checksum:iF635D6F54504D68D
GO
Isoform 4 (identifier: Q13477-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     18-112: Missing.
     223-310: VLHSPTSPEP...TQGEVIPTGS → A

Show »
Length:200
Mass (Da):21,247
Checksum:i84204D98FC1FC7C7
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti240S → P in AAB02194 (PubMed:8609404).Curated1
Sequence conflicti240S → P in AAC51354 (PubMed:9162097).Curated1
Sequence conflicti242D → N in AAB02194 (PubMed:8609404).Curated1
Sequence conflicti242D → N in AAC51354 (PubMed:9162097).Curated1
Sequence conflicti254Q → P in AAC13661 (PubMed:8989586).Curated1

Polymorphismi

The number of repeats in the mucin domain varies between 5 and 8 repeats.2 Publications

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_047901253S → SPESPDTTSQEPPDTTSQEP PDTTS.3 Publications1
Natural variantiVAR_017580300P → H.Corresponds to variant rs3745925dbSNPEnsembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_04769418 – 112Missing in isoform 4. 1 PublicationAdd BLAST95
Alternative sequenceiVSP_050014223 – 334VLHSP…GLLLL → A in isoform 2. CuratedAdd BLAST112
Alternative sequenceiVSP_043202223 – 310VLHSP…IPTGS → A in isoform 3 and isoform 4. 2 PublicationsAdd BLAST88

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43628 mRNA. Translation: AAB02194.1.
U80016
, U80012, U80013, U80014, U80015 Genomic DNA. Translation: AAC51354.1.
U82483 mRNA. Translation: AAC13661.1.
AY732484 mRNA. Translation: AAV33123.1.
AC005775 Genomic DNA. Translation: AAC62844.1.
CH471242 Genomic DNA. Translation: EAW61195.1.
BC137506 mRNA. Translation: AAI37507.1.
BC137507 mRNA. Translation: AAI37508.1.
BC144065 mRNA. Translation: AAI44066.1.
BC142629 mRNA. Translation: AAI42630.1.
CCDSiCCDS12028.1. [Q13477-1]
CCDS12029.1. [Q13477-3]
RefSeqiNP_570116.2. NM_130760.2. [Q13477-1]
NP_570118.1. NM_130762.2. [Q13477-3]
UniGeneiHs.102598.

Genome annotation databases

EnsembliENST00000215637; ENSP00000215637; ENSG00000099866. [Q13477-1]
ENST00000346144; ENSP00000304247; ENSG00000099866. [Q13477-3]
ENST00000382683; ENSP00000372130; ENSG00000099866. [Q13477-4]
GeneIDi8174.
KEGGihsa:8174.
UCSCiuc002los.4. human. [Q13477-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43628 mRNA. Translation: AAB02194.1.
U80016
, U80012, U80013, U80014, U80015 Genomic DNA. Translation: AAC51354.1.
U82483 mRNA. Translation: AAC13661.1.
AY732484 mRNA. Translation: AAV33123.1.
AC005775 Genomic DNA. Translation: AAC62844.1.
CH471242 Genomic DNA. Translation: EAW61195.1.
BC137506 mRNA. Translation: AAI37507.1.
BC137507 mRNA. Translation: AAI37508.1.
BC144065 mRNA. Translation: AAI44066.1.
BC142629 mRNA. Translation: AAI42630.1.
CCDSiCCDS12028.1. [Q13477-1]
CCDS12029.1. [Q13477-3]
RefSeqiNP_570116.2. NM_130760.2. [Q13477-1]
NP_570118.1. NM_130762.2. [Q13477-3]
UniGeneiHs.102598.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1BQSX-ray2.20A23-231[»]
1GSMX-ray1.90A19-224[»]
4HBQX-ray1.40A/B23-171[»]
A/B180-224[»]
4HC1X-ray2.87A/B23-171[»]
A/B180-224[»]
4HCRX-ray2.30A/B23-225[»]
4HD9X-ray1.70A23-225[»]
ProteinModelPortaliQ13477.
SMRiQ13477.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi113825. 4 interactors.
IntActiQ13477. 1 interactor.
STRINGi9606.ENSP00000215637.

Chemistry databases

BindingDBiQ13477.
ChEMBLiCHEMBL4467.

PTM databases

iPTMnetiQ13477.
PhosphoSitePlusiQ13477.

Polymorphism and mutation databases

BioMutaiMADCAM1.
DMDMi218511712.

Proteomic databases

PaxDbiQ13477.
PeptideAtlasiQ13477.
PRIDEiQ13477.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000215637; ENSP00000215637; ENSG00000099866. [Q13477-1]
ENST00000346144; ENSP00000304247; ENSG00000099866. [Q13477-3]
ENST00000382683; ENSP00000372130; ENSG00000099866. [Q13477-4]
GeneIDi8174.
KEGGihsa:8174.
UCSCiuc002los.4. human. [Q13477-1]

Organism-specific databases

CTDi8174.
DisGeNETi8174.
GeneCardsiMADCAM1.
H-InvDBHIX0014553.
HGNCiHGNC:6765. MADCAM1.
MIMi102670. gene.
neXtProtiNX_Q13477.
OpenTargetsiENSG00000099866.
PharmGKBiPA30522.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410J133. Eukaryota.
ENOG411140D. LUCA.
GeneTreeiENSGT00510000049549.
HOGENOMiHOG000060103.
HOVERGENiHBG108114.
InParanoidiQ13477.
KOiK06779.
TreeFamiTF337571.

Enzyme and pathway databases

BioCyciZFISH:ENSG00000099866-MONOMER.
ReactomeiR-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-216083. Integrin cell surface interactions.
SignaLinkiQ13477.

Miscellaneous databases

EvolutionaryTraceiQ13477.
GeneWikiiAddressin.
GenomeRNAii8174.
PROiQ13477.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000099866.
CleanExiHS_MADCAM1.
ExpressionAtlasiQ13477. baseline and differential.
GenevisibleiQ13477. HS.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
InterProiIPR015169. Adhes-Ig-like.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF09085. Adhes-Ig_like. 1 hit.
[Graphical view]
ProDomiPD336606. Adhes-Ig-like. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00409. IG. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 2 hits.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiMADCA_HUMAN
AccessioniPrimary (citable) accession number: Q13477
Secondary accession number(s): A5PKV4
, B2RPL9, O60222, O75867, Q5UGI7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 2, 2004
Last sequence update: December 16, 2008
Last modified: November 2, 2016
This is version 145 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.