Reviewed,
UniProtKB/Swiss-Prot Q13439 (GOGA4_HUMAN)
Last modified
June 16, 2009.
Version 89.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Golgin subfamily A member 4 Alternative name(s): Trans-Golgi p230 256 kDa golgin Golgin-245 Protein 72.1 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2230 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | May play a role in vesicular transport from the trans-Golgi. |
| Subunit structure | Homodimer. Interacts with ARL1 with bound GTP. Ref.10 |
| Subcellular location | Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein. Ref.10 |
| Domain | Extended rod-like protein with coiled-coil domains. |
| Involvement in disease | Antibodies against GOLGA4 are present in sera from patients with Sjoegren syndrome. Sera from patients with Sjoegren syndrome often contain antibodies that react with normal components of the Golgi complex. Antibodies against GOLGA4 are found in sera from hepatitis B patients. |
| Sequence similarities | Contains 1 GRIP domain. |
| Sequence caution | The sequence CAA58041.1 differs from that shown. Reason: Frameshift at position 2153. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Golgi apparatus Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil |
| PTM | Phosphoprotein |
| Technical term | 3D-structure |
| Gene Ontology (GO) | |
| Biological process | vesicle-mediated transport Ref.1 Traceable author statement. Source: ProtInc |
| Cellular component | Golgi membrane Inferred from electronic annotation. Source: UniProtKB-SubCell trans-Golgi networkTraceable author statement. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: Q13439-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 3 (identifier: Q13439-3) The sequence of this isoform differs from the canonical sequence as follows: 2103-2109: Missing. | ||||||
| Isoform 4 (identifier: Q13439-4) The sequence of this isoform differs from the canonical sequence as follows: 2222-2230: FTSPRSGIF → SWLRSSS |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||
Molecule processing | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2230 | 2230 | Golgin subfamily A member 4 | PRO_0000190059 | |||||||||||||
Regions | |||||||||||||||||
| Domain | 2168 – 2215 | 48 | GRIP | ||||||||||||||
| Coiled coil | 133 – 2185 | 2053 | Potential | ||||||||||||||
| Compositional bias | 252 – 2096 | 1845 | Glu-rich | ||||||||||||||
Amino acid modifications | |||||||||||||||||
| Modified residue | 41 | 1 | Phosphoserine By similarity | ||||||||||||||
| Modified residue | 71 | 1 | Phosphoserine Ref.5 Ref.7 | ||||||||||||||
| Modified residue | 89 | 1 | Phosphoserine Ref.7 | ||||||||||||||
| Modified residue | 266 | 1 | Phosphoserine Ref.7 | ||||||||||||||
| Modified residue | 342 | 1 | Phosphothreonine Ref.6 | ||||||||||||||
| Modified residue | 346 | 1 | Phosphothreonine Ref.6 | ||||||||||||||
| Modified residue | 2223 | 1 | Phosphothreonine Ref.7 | ||||||||||||||
Natural variations | |||||||||||||||||
| Alternative sequence | 2103 – 2109 | 7 | Missing in isoform 3. | VSP_004274 | |||||||||||||
| Alternative sequence | 2222 – 2230 | 9 | FTSPRSGIF → SWLRSSS in isoform 4. | VSP_004275 | |||||||||||||
| Natural variant | 1028 | 1 | Q → K: dbSNP rs11718848. | VAR_033975 | |||||||||||||
| Natural variant | 1552 | 1 | N → S: dbSNP rs9840779. | VAR_033976 | |||||||||||||
| Natural variant | 2058 | 1 | R → S: dbSNP rs11924014. | VAR_049258 | |||||||||||||
Experimental info | |||||||||||||||||
| Mutagenesis | 2177 | 1 | Y → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2177 | 1 | Y → F: No effect. Ref.10 | ||||||||||||||
| Mutagenesis | 2181 | 1 | V → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2183 | 1 | F → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2186 | 1 | M → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2193 | 1 | T → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2194 | 1 | M → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2197 | 1 | V → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2198 | 1 | I → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2202 | 1 | L → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2204 | 1 | F → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Mutagenesis | 2212 | 1 | I → A: Abolishes Golgi localization. Ref.10 | ||||||||||||||
| Sequence conflict | 188 | 1 | R → K in AAC51791. Ref.3 | ||||||||||||||
| Sequence conflict | 220 | 1 | Y → H in AAC51791. Ref.3 | ||||||||||||||
| Sequence conflict | 276 | 1 | T → A in AAC51791. Ref.3 | ||||||||||||||
| Sequence conflict | 584 | 1 | K → E in AAC51791. Ref.3 | ||||||||||||||
| Sequence conflict | 628 | 1 | T → A Ref.3 | ||||||||||||||
| Sequence conflict | 630 | 1 | K → E Ref.3 | ||||||||||||||
| Sequence conflict | 682 | 1 | K → N in AAC51791. Ref.3 | ||||||||||||||
Secondary structure | |||||||||||||||||
Helix Strand Turn | |||||||||||||||||
| Helix | 2173 – 2186 | 14 | |||||||||||||||
| Helix | 2191 – 2201 | 11 | |||||||||||||||
| Helix | 2206 – 2215 | 10 | |||||||||||||||
| Helix | 2217 – 2220 | 4 | |||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular characterization of trans-Golgi p230: a human peripheral membrane protein encoded by a gene on chromosome 6p12-22 contains extensive coiled-coil alpha-helical domains and a granin motif." Erlich R., Gleeson P.A., Campbell P., Dietzsch E., Toh B.-H. J. Biol. Chem. 271:8328-8337(1996) [PubMed: 8626529] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], ALTERNATIVE SPLICING. |
| [2] | Seelig H.P. Submitted (NOV-1994) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [3] | "Molecular characterization of golgin-245, a novel Golgi complex protein containing a granin signature." Fritzler M.J., Lung C.-C., Hamel J.C., Griffith K.J., Chan E.K.L. J. Biol. Chem. 270:31262-31268(1995) [PubMed: 8537393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 131-2230. Tissue: Placenta. |
| [4] | Balague C. Thesis (1994), Instituto municipal de investigacion medica, Spain Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 524-672. Tissue: Gastric fundus. |
| [5] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-71, MASS SPECTROMETRY. Tissue: Epithelium. |
| [6] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-342 AND THR-346, MASS SPECTROMETRY. Tissue: Epithelium. |
| [7] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-71; SER-89; SER-266 AND THR-2223, MASS SPECTROMETRY. |
| [8] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [9] | "Structural basis for Arl1-dependent targeting of homodimeric GRIP domains to the Golgi apparatus." Panic B., Perisic O., Veprintsev D.B., Williams R.L., Munro S. Mol. Cell 12:863-874(2003) [PubMed: 14580338] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 2170-2221 IN COMPLEX WITH ARL1. |
| [10] | "Structural basis for recruitment of GRIP domain golgin-245 by small GTPase Arl1." Wu M., Lu L., Hong W., Song H. Nat. Struct. Mol. Biol. 11:86-94(2004) [PubMed: 14718928] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 2172-2222 IN COMPLEX WITH ARL1, SUBCELLULAR LOCATION, MUTAGENESIS OF TYR-2177; VAL-2181; PHE-2183; MET-2186; THR-2193; MET-2194; VAL-2197; ILE-2198; LEU-2202; PHE-2204 AND ILE-2212, SUBUNIT. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| U41740 mRNA. Translation: AAC50434.1. X82834 mRNA. Translation: CAA58041.1. Frameshift. U31906 mRNA. Translation: AAC51791.1. X76942 mRNA. Translation: CAA54261.1. | |||||||||||||||||||
| IPI | IPI00013272. IPI00220522. IPI00927614. | ||||||||||||||||||
| RefSeq | NP_002069.2. | ||||||||||||||||||
| UniGene | Hs.344151 | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
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| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | Q13439. 6 interactions. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | Q13439. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | Q13439. | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENSG00000144674. Homo sapiens. [Contig view] | ||||||||||||||||||
| GeneID | 2803. | ||||||||||||||||||
| KEGG | hsa:2803. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| GeneCards | GC03P037259. | ||||||||||||||||||
| H-InvDB | HIX0020830. | ||||||||||||||||||
| HGNC | HGNC:4427. GOLGA4. | ||||||||||||||||||
| MIM | 602509. gene. | ||||||||||||||||||
| PharmGKB | PA28808. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| HOGENOM | Q13439. | ||||||||||||||||||
| HOVERGEN | Q13439. | ||||||||||||||||||
| OMA | Q13439. DDKTNVV. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | Q13439. | ||||||||||||||||||
| Bgee | Q13439. | ||||||||||||||||||
| CleanEx | HS_GOLGA4. | ||||||||||||||||||
| GermOnline | ENSG00000144674. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR000237. GRIP. [Graphical view] | ||||||||||||||||||
| Pfam | PF01465. GRIP. 1 hit. [Graphical view] | ||||||||||||||||||
| SMART | SM00755. Grip. 1 hit. [Graphical view] | ||||||||||||||||||
| PROSITE | PS50913. GRIP. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other Resources | |||||||||||||||||||
| NextBio | 11049. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | GOGA4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q13439 Secondary accession number(s): Q13270, Q13654, Q14436 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


