Q13439 (GOGA4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 128.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Golgin subfamily A member 4 Alternative name(s): 256 kDa golgin Golgin-245 Protein 72.1 Trans-Golgi p230 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 2230 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May play a role in delivery of transport vesicles containing GPI-linked proteins from the trans-Golgi network through its interaction with MACF1. Ref.8 |
| Subunit structure | Homodimer. Interacts with GTP bound ARL1. Interacts with MACF1. Ref.7 Ref.8 Ref.15 |
| Subcellular location | Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein. Golgi apparatus Ref.7 Ref.8 Ref.15. |
| Domain | Extended rod-like protein with coiled-coil domains. |
| Miscellaneous | Antibodies against GOLGA4 are present in sera from patients with Sjoegren syndrome. Sera from patients with Sjoegren syndrome often contain antibodies that react with normal components of the Golgi complex. |
| Sequence similarities | Contains 1 GRIP domain. |
| Sequence caution | The sequence BAD92930.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence CAA58041.1 differs from that shown. Reason: Frameshift at position 2153. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Golgi apparatus Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil |
| PTM | Phosphoprotein |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | Golgi to plasma membrane protein transport Inferred from direct assay Ref.8. Source: UniProtKB protein targeting to GolgiInferred from electronic annotation. Source: InterPro |
| Cellular_component | Golgi apparatus Inferred from direct assay Ref.8PubMed 19224922. Source: UniProtKB Golgi membraneInferred from electronic annotation. Source: UniProtKB-SubCell trans-Golgi networkTraceable author statement PubMed 1400343. Source: ProtInc |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ANKRD27 | Q96NW4 | 2 | EBI-1037845,EBI-6125599 |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: Q13439-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 3 (identifier: Q13439-3) The sequence of this isoform differs from the canonical sequence as follows: 2103-2109: Missing. | ||||||
| Isoform 4 (identifier: Q13439-4) The sequence of this isoform differs from the canonical sequence as follows: 2222-2230: FTSPRSGIF → SWLRSSS | ||||||
| Isoform 5 (identifier: Q13439-5) The sequence of this isoform differs from the canonical sequence as follows: 54-54: E → ENASTHASKSPDSVNGSEPSIPQ 2103-2109: Missing. 2222-2230: FTSPRSGIF → SWLRSSS | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||
Molecule processing | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2230 | 2230 | Golgin subfamily A member 4 | PRO_0000190059 | |||||||||||
Regions | |||||||||||||||
| Domain | 2168 – 2215 | 48 | GRIP | ||||||||||||
| Region | 133 – 203 | 71 | Interaction with MACF1 | ||||||||||||
| Coiled coil | 133 – 2185 | 2053 | Potential | ||||||||||||
| Compositional bias | 252 – 2096 | 1845 | Glu-rich | ||||||||||||
Amino acid modifications | |||||||||||||||
| Modified residue | 41 | 1 | Phosphoserine By similarity | ||||||||||||
| Modified residue | 71 | 1 | Phosphoserine Ref.9 Ref.11 Ref.13 | ||||||||||||
| Modified residue | 78 | 1 | Phosphoserine Ref.11 | ||||||||||||
| Modified residue | 89 | 1 | Phosphoserine Ref.9 | ||||||||||||
| Modified residue | 266 | 1 | Phosphoserine Ref.9 Ref.10 Ref.11 Ref.13 | ||||||||||||
| Modified residue | 2223 | 1 | Phosphothreonine Ref.9 | ||||||||||||
Natural variations | |||||||||||||||
| Alternative sequence | 54 | 1 | E → ENASTHASKSPDSVNGSEPS IPQ in isoform 5. | VSP_044819 | |||||||||||
| Alternative sequence | 2103 – 2109 | 7 | Missing in isoform 3 and isoform 5. | VSP_004274 | |||||||||||
| Alternative sequence | 2222 – 2230 | 9 | FTSPRSGIF → SWLRSSS in isoform 4 and isoform 5. | VSP_004275 | |||||||||||
| Natural variant | 1028 | 1 | Q → K. Corresponds to variant rs11718848 [ dbSNP | Ensembl ]. | VAR_033975 | |||||||||||
| Natural variant | 1552 | 1 | N → S. Corresponds to variant rs9840779 [ dbSNP | Ensembl ]. | VAR_033976 | |||||||||||
| Natural variant | 2058 | 1 | R → S. Corresponds to variant rs11924014 [ dbSNP | Ensembl ]. | VAR_049258 | |||||||||||
Experimental info | |||||||||||||||
| Mutagenesis | 2177 | 1 | Y → A: Loss of Golgi membrane localization. Loss of ARL1-binding. Ref.7 Ref.15 | ||||||||||||
| Mutagenesis | 2177 | 1 | Y → F: No effect. Ref.7 Ref.15 | ||||||||||||
| Mutagenesis | 2181 | 1 | V → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2183 | 1 | F → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2186 | 1 | M → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2193 | 1 | T → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2194 | 1 | M → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2197 | 1 | V → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2198 | 1 | I → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2202 | 1 | L → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2204 | 1 | F → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Mutagenesis | 2212 | 1 | I → A: Abolishes Golgi localization. Ref.15 | ||||||||||||
| Sequence conflict | 188 | 1 | R → K in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 220 | 1 | Y → H in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 276 | 1 | T → A in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 584 | 1 | K → E in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 628 | 1 | T → A in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 630 | 1 | K → E in AAC51791. Ref.5 | ||||||||||||
| Sequence conflict | 682 | 1 | K → N in AAC51791. Ref.5 | ||||||||||||
Secondary structure | |||||||||||||||
Helix Strand Turn | |||||||||||||||
| Helix | 2173 – 2186 | 14 | |||||||||||||
| Helix | 2191 – 2201 | 11 | |||||||||||||
| Helix | 2206 – 2221 | 16 | |||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular characterization of trans-Golgi p230: a human peripheral membrane protein encoded by a gene on chromosome 6p12-22 contains extensive coiled-coil alpha-helical domains and a granin motif." Erlich R., Gleeson P.A., Campbell P., Dietzsch E., Toh B.-H. J. Biol. Chem. 271:8328-8337(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), ALTERNATIVE SPLICING. |
| [2] | Seelig H.P. Submitted (NOV-1994) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "Homo sapiens protein coding cDNA." Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1279 (ISOFORM 5). Tissue: Brain. |
| [5] | "Molecular characterization of golgin-245, a novel Golgi complex protein containing a granin signature." Fritzler M.J., Lung C.-C., Hamel J.C., Griffith K.J., Chan E.K.L. J. Biol. Chem. 270:31262-31268(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 131-2230. Tissue: Placenta. |
| [6] | Balague C. Thesis (1994), Instituto municipal de investigacion medica, Spain Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 524-672. Tissue: Gastric fundus. |
| [7] | "ADP-ribosylation factors (ARFs) and ARF-like 1 (ARL1) have both specific and shared effectors: characterizing ARL1-binding proteins." Van Valkenburgh H., Shern J.F., Sharer J.D., Zhu X., Kahn R.A. J. Biol. Chem. 276:22826-22837(2001) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ARL1 AND ARL3, SUBCELLULAR LOCATION, MUTAGENESIS OF TYR-2177. |
| [8] | "Interaction between p230 and MACF1 is associated with transport of a glycosyl phosphatidyl inositol-anchored protein from the Golgi to the cell periphery." Kakinuma T., Ichikawa H., Tsukada Y., Nakamura T., Toh B.H. Exp. Cell Res. 298:388-398(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH MACF1. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-71; SER-89; SER-266 AND THR-2223, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-266, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [11] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-71; SER-78 AND SER-266, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-71 AND SER-266, MASS SPECTROMETRY. |
| [14] | "Structural basis for Arl1-dependent targeting of homodimeric GRIP domains to the Golgi apparatus." Panic B., Perisic O., Veprintsev D.B., Williams R.L., Munro S. Mol. Cell 12:863-874(2003) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 2170-2221 IN COMPLEX WITH ARL1. |
| [15] | "Structural basis for recruitment of GRIP domain golgin-245 by small GTPase Arl1." Wu M., Lu L., Hong W., Song H. Nat. Struct. Mol. Biol. 11:86-94(2004) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 2172-2222 IN COMPLEX WITH ARL1, SUBCELLULAR LOCATION, MUTAGENESIS OF TYR-2177; VAL-2181; PHE-2183; MET-2186; THR-2193; MET-2194; VAL-2197; ILE-2198; LEU-2202; PHE-2204 AND ILE-2212, SUBUNIT. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | U41740 mRNA. Translation: AAC50434.1. X82834 mRNA. Translation: CAA58041.1. Frameshift. AC097359 Genomic DNA. No translation available. AB209693 mRNA. Translation: BAD92930.1. Different initiation. U31906 mRNA. Translation: AAC51791.1. X76942 mRNA. Translation: CAA54261.1. | ||||||||||||||||||
| IPI | IPI00013272. IPI00220522. IPI00927614. IPI01009738. | ||||||||||||||||||
| RefSeq | NP_001166184.1. NM_001172713.1. NP_002069.2. NM_002078.4. | ||||||||||||||||||
| UniGene | Hs.344151. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| ProteinModelPortal | Q13439. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | Q13439. 7 interactions. | ||||||||||||||||||
| MINT | MINT-3027757. | ||||||||||||||||||
| STRING | 9606.ENSP00000354486. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | Q13439. | ||||||||||||||||||
Polymorphism databases | |||||||||||||||||||
| DMDM | 12643718. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PaxDb | Q13439. | ||||||||||||||||||
| PRIDE | Q13439. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000356847; ENSP00000349305; ENSG00000144674. ENST00000361924; ENSP00000354486; ENSG00000144674. | ||||||||||||||||||
| GeneID | 2803. | ||||||||||||||||||
| KEGG | hsa:2803. | ||||||||||||||||||
| UCSC | uc003cgv.3. human. uc003cgw.3. human. uc003cgx.3. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 2803. | ||||||||||||||||||
| GeneCards | GC03P037284. | ||||||||||||||||||
| HGNC | HGNC:4427. GOLGA4. | ||||||||||||||||||
| HPA | HPA035102. | ||||||||||||||||||
| MIM | 602509. gene. | ||||||||||||||||||
| neXtProt | NX_Q13439. | ||||||||||||||||||
| PharmGKB | PA28808. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | NOG12793. | ||||||||||||||||||
| HOGENOM | HOG000112753. | ||||||||||||||||||
| HOVERGEN | HBG051754. | ||||||||||||||||||
| InParanoid | Q13439. | ||||||||||||||||||
| OMA | LEDKYNE. | ||||||||||||||||||
| OrthoDB | EOG4QRH34. | ||||||||||||||||||
| PhylomeDB | Q13439. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | Q13439. | ||||||||||||||||||
| Bgee | Q13439. | ||||||||||||||||||
| CleanEx | HS_GOLGA4. | ||||||||||||||||||
| Genevestigator | Q13439. | ||||||||||||||||||
| GermOnline | ENSG00000144674. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| Gene3D | 1.10.220.60. 1 hit. | ||||||||||||||||||
| InterPro | IPR000237. GRIP. [Graphical view] | ||||||||||||||||||
| Pfam | PF01465. GRIP. 1 hit. [Graphical view] | ||||||||||||||||||
| SMART | SM00755. Grip. 1 hit. [Graphical view] | ||||||||||||||||||
| SUPFAM | SSF101283. GRIP. 1 hit. | ||||||||||||||||||
| PROSITE | PS50913. GRIP. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other | |||||||||||||||||||
| ChiTaRS | GOLGA4. human. | ||||||||||||||||||
| EvolutionaryTrace | Q13439. | ||||||||||||||||||
| GenomeRNAi | 2803. | ||||||||||||||||||
| NextBio | 11049. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | GOGA4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q13439 Secondary accession number(s): F8W8Q7 Q59EW8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
