Q13435 (SF3B2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 108.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Splicing factor 3B subunit 2 Alternative name(s): Pre-mRNA-splicing factor SF3b 145 kDa subunit Short name=SF3b145 SF3b150 Spliceosome-associated protein 145 Short name=SAP 145 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 895 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. |
| Subunit structure | Identified in the spliceosome C complex. Component of the U11/U12 snRNPs that are part of the U12-type spliceosome. Component of splicing factor SF3B which is composed of at least eight subunits; SF3B1/SAP155/SF3B155, SF3B2/SAP145/SF3B145, SF3B3/SAP130/SF3B130, SF3B4/SAP49/SF3B49, SF3B14A, PHF5A/SF3B14B, SF3B10 and SF3B125. SF3B associates with the splicing factor SF3A and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex (U2 snRNP). SF3B2 interacts directly with SF3B4. Interacts with HIV-1 Vpr. Ref.10 |
| Subcellular location | Nucleus By similarity. |
| Post-translational modification | Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.9 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 Ref.19 |
| Sequence similarities | Contains 1 SAP domain. |
| Sequence caution | The sequence AAA97461.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAA97461.1 differs from that shown. Reason: Frameshift at position 28. The sequence AAH53577.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence BAG61831.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Host-virus interaction mRNA processing mRNA splicing |
| Cellular component | Nucleus Spliceosome |
| Domain | Coiled coil |
| PTM | Acetylation Phosphoprotein |
| Technical term | 3D-structure Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological process | interspecies interaction between organisms Inferred from electronic annotation. Source: UniProtKB-KW nuclear mRNA splicing, via spliceosomeInferred by curator Ref.6. Source: UniProtKB |
| Cellular component | U12-type spliceosomal complex Inferred from direct assay Ref.8. Source: UniProtKB catalytic step 2 spliceosomeInferred from direct assay Ref.6. Source: UniProtKB nucleoplasmTraceable author statement. Source: Reactome |
| Molecular function | nucleic acid binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||
Molecule processing | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 895 | 895 | Splicing factor 3B subunit 2 | PRO_0000174328 | |||||||||
Regions | |||||||||||||
| Domain | 24 – 58 | 35 | SAP | ||||||||||
| Coiled coil | 140 – 199 | 60 | Potential | ||||||||||
| Compositional bias | 16 – 21 | 6 | Poly-Pro | ||||||||||
| Compositional bias | 91 – 96 | 6 | Poly-Pro | ||||||||||
| Compositional bias | 104 – 113 | 10 | Poly-Pro | ||||||||||
| Compositional bias | 129 – 132 | 4 | Poly-Pro | ||||||||||
| Compositional bias | 249 – 253 | 5 | Poly-Pro | ||||||||||
| Compositional bias | 292 – 297 | 6 | Poly-Glu | ||||||||||
| Compositional bias | 331 – 335 | 5 | Poly-Lys | ||||||||||
| Compositional bias | 699 – 702 | 4 | Poly-Glu | ||||||||||
| Compositional bias | 720 – 726 | 7 | Poly-Glu | ||||||||||
Amino acid modifications | |||||||||||||
| Modified residue | 201 | 1 | Phosphothreonine Ref.16 | ||||||||||
| Modified residue | 217 | 1 | Phosphothreonine Ref.16 | ||||||||||
| Modified residue | 275 | 1 | N6-acetyllysine Ref.20 | ||||||||||
| Modified residue | 289 | 1 | Phosphoserine Ref.13 Ref.16 | ||||||||||
| Modified residue | 307 | 1 | Phosphoserine Ref.11 Ref.15 Ref.16 Ref.18 Ref.19 | ||||||||||
| Modified residue | 309 | 1 | Phosphoserine Ref.11 Ref.14 Ref.15 Ref.16 Ref.18 Ref.19 | ||||||||||
| Modified residue | 311 | 1 | Phosphothreonine Ref.14 Ref.16 | ||||||||||
| Modified residue | 343 | 1 | Phosphoserine Ref.12 | ||||||||||
| Modified residue | 360 | 1 | Phosphoserine Ref.12 Ref.19 | ||||||||||
| Modified residue | 362 | 1 | Phosphoserine Ref.9 Ref.19 | ||||||||||
| Modified residue | 416 | 1 | Phosphoserine Ref.9 | ||||||||||
| Modified residue | 431 | 1 | Phosphoserine Ref.9 Ref.12 Ref.16 Ref.17 | ||||||||||
| Modified residue | 435 | 1 | Phosphoserine Ref.9 Ref.12 Ref.16 Ref.17 | ||||||||||
| Modified residue | 436 | 1 | Phosphoserine Ref.9 Ref.12 Ref.16 Ref.17 | ||||||||||
| Modified residue | 778 | 1 | Phosphoserine Ref.12 | ||||||||||
| Modified residue | 780 | 1 | Phosphothreonine Ref.12 Ref.16 Ref.18 Ref.19 | ||||||||||
Experimental info | |||||||||||||
| Sequence conflict | 602 | 1 | K → E in BAF83539. Ref.1 | ||||||||||
| Sequence conflict | 765 | 1 | E → G in BAF83539. Ref.1 | ||||||||||
Secondary structure | |||||||||||||
Helix Strand Turn | |||||||||||||
| Helix | 29 – 38 | 10 | |||||||||||
| Helix | 47 – 60 | 14 | |||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lymphoblast and Peripheral blood. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Eye, Kidney, Lung and Testis. |
| [3] | "Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A." Gozani O., Feld R., Reed R. Genes Dev. 10:233-243(1996) [PubMed: 8566756] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 9-895, PROTEIN SEQUENCE OF 174-182 AND 817-840. Tissue: Cervix carcinoma. |
| [4] | "Functional association of U2 snRNP with the ATP-independent spliceosomal complex E." Das R., Zhou Z., Reed R. Mol. Cell 5:779-787(2000) [PubMed: 10882114] [Abstract] Cited for: CHARACTERIZATION OF THE SPLICEOSOME. |
| [5] | "Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein." Will C.L., Urlaub H., Achsel T., Gentzel M., Wilm M., Luehrmann R. EMBO J. 21:4978-4988(2002) [PubMed: 12234937] [Abstract] Cited for: IDENTIFICATION IN THE SF3B COMPLEX. |
| [6] | "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis." Jurica M.S., Licklider L.J., Gygi S.P., Grigorieff N., Moore M.J. RNA 8:426-439(2002) [PubMed: 11991638] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE SPLICEOSOMAL C COMPLEX. |
| [7] | "Molecular architecture of the multiprotein splicing factor SF3b." Golas M.M., Sander B., Will C.L., Luhrmann R., Stark H. Science 300:980-984(2003) [PubMed: 12738865] [Abstract] Cited for: IDENTIFICATION IN THE SF3B COMPLEX, ELECTRON MICROSCOPY OF THE SF3B COMPLEX. |
| [8] | "The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome." Will C.L., Schneider C., Hossbach M., Urlaub H., Rauhut R., Elbashir S., Tuschl T., Luehrmann R. RNA 10:929-941(2004) [PubMed: 15146077] [Abstract] Cited for: IDENTIFICATION IN A COMPLEX WITH THE U11/U12 SPLICEOSOME, MASS SPECTROMETRY. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-362; SER-416; SER-431; SER-435 AND SER-436, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Human immunodeficiency virus type 1 Vpr induces G2 checkpoint activation by interacting with the splicing factor SAP145." Terada Y., Yasuda Y. Mol. Cell. Biol. 26:8149-8158(2006) [PubMed: 16923959] [Abstract] Cited for: INTERACTION WITH HIV-1 VPR. |
| [11] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-307 AND SER-309, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry." Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A. Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007) [PubMed: 17287340] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-343; SER-360; SER-431; SER-435; SER-436; SER-778 AND THR-780, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [13] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-289, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [14] | "Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column." Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y. Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-309 AND THR-311, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [15] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-307 AND SER-309, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-201; THR-217; SER-289; SER-307; SER-309; THR-311; SER-431; SER-435; SER-436 AND THR-780, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [17] | "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography." Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J. Proteomics 8:1346-1361(2008) [PubMed: 18318008] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-431; SER-435 AND SER-436, MASS SPECTROMETRY. Tissue: Liver. |
| [18] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-307; SER-309 AND THR-780, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [19] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-307; SER-309; SER-360; SER-362 AND THR-780, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [20] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-275, MASS SPECTROMETRY. |
| [21] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [22] | "Solution structure of the SAP domain of human splicing factor 3B subunit 2." RIKEN structural genomics initiative (RSGI) Submitted (APR-2007) to the PDB data bank Cited for: STRUCTURE BY NMR OF 24-68. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AK290850 mRNA. Translation: BAF83539.1. AK300016 mRNA. Translation: BAG61831.1. Different initiation. BC000401 mRNA. Translation: AAH00401.2. BC007610 mRNA. Translation: AAH07610.1. BC014125 mRNA. Translation: AAH14125.2. BC053577 mRNA. Translation: AAH53577.1. Sequence problems. U41371 mRNA. Translation: AAA97461.1. Frameshift. | ||||||||||||
| IPI | IPI00221106. | ||||||||||||
| RefSeq | NP_006833.2. NM_006842.2. | ||||||||||||
| UniGene | Hs.406423. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q13435. | ||||||||||||
| SMR | Q13435. Positions 26-68. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q13435. 7 interactions. | ||||||||||||
| MINT | MINT-4915443. | ||||||||||||
| STRING | Q13435. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q13435. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 296452908. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q13435. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000322535; ENSP00000318861; ENSG00000087365. ENST00000355456; ENSP00000347631; ENSG00000087365. | ||||||||||||
| GeneID | 10992. | ||||||||||||
| KEGG | hsa:10992. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 10992. | ||||||||||||
| GeneCards | GC11P065827. | ||||||||||||
| H-InvDB | HIX0009823. | ||||||||||||
| HGNC | HGNC:10769. SF3B2. | ||||||||||||
| HPA | HPA045028. | ||||||||||||
| MIM | 605591. gene. | ||||||||||||
| neXtProt | NX_Q13435. | ||||||||||||
| PharmGKB | PA35687. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG05951. | ||||||||||||
| GeneTree | ENSGT00390000006734. | ||||||||||||
| HOVERGEN | HBG054023. | ||||||||||||
| InParanoid | Q13435. | ||||||||||||
| OMA | TRQTGMV. | ||||||||||||
| OrthoDB | EOG4GB75Q. | ||||||||||||
| PhylomeDB | Q13435. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Reactome | REACT_1675. mRNA Processing. REACT_71. Gene Expression. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q13435. | ||||||||||||
| Bgee | Q13435. | ||||||||||||
| CleanEx | HS_SF3B2. | ||||||||||||
| Genevestigator | Q13435. | ||||||||||||
| GermOnline | ENSG00000087365. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR007180. DUF382. IPR006568. PSP. IPR003034. SAP_DNA-bd. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:1.10.720.30. G3DSA:1.10.720.30. 1 hit. | ||||||||||||
| KO | K12829. | ||||||||||||
| Pfam | PF04037. DUF382. 1 hit. PF04046. PSP. 1 hit. PF02037. SAP. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00581. PSP. 1 hit. SM00513. SAP. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS50800. SAP. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| PMAP-CutDB | Q13435. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | SF3B2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q13435 Secondary accession number(s): A8K485 Q9BWD2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with