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Q133M6

- Q133M6_RHOPS

UniProt

Q133M6 - Q133M6_RHOPS

Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPD_3490

Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPAL316057:GHDC-3550-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:RPD_3490Imported
    OrganismiRhodopseudomonas palustris (strain BisB5)Imported
    Taxonomic identifieri316057 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001818: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi316057.RPD_3490.

    Structurei

    3D structure databases

    ProteinModelPortaliQ133M6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q133M6-1 [UniParc]FASTAAdd to Basket

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    MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL    50
    RLEYNGVFKS WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG 100
    GGTVQLWDRG YWECDDPERG FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG 150
    GKRTNWLLIK HRDDDAREGK ANDILDQDRS VASGRAMTEI AQGKGRAPKP 200
    FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA PPNKAKATTA 250
    KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG 300
    HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT 350
    EIVALDQHGH PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD 400
    RKRRLQELLT AARGRRKQGL IRYVEHFDTG GDAILQSACK LSLEGIVSKK 450
    LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK TNAGKFRSLL VGVHHDDHLA 500
    YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT ADVHWLAPEL 550
    VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR 600
    AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS 650
    RIGDAVNKRD LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA 700
    MPGMSNLIAL AKVAGDRKPY VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY 750
    EVPGRLVFDL DPAPEVGFDA VIVAAREMKD RLEAIGLPSF CKTTGGKGLH 800
    VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS KQQRKGKIFL 850
    DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA 900
    LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA 930
    Length:930
    Mass (Da):101,391
    Last modified:October 31, 2006 - v1
    Checksum:iEA276BD0346EA711
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000283 Genomic DNA. Translation: ABE40713.1.
    RefSeqiYP_570614.1. NC_007958.1.

    Genome annotation databases

    EnsemblBacteriaiABE40713; ABE40713; RPD_3490.
    GeneIDi4024004.
    KEGGirpd:RPD_3490.
    PATRICi23282115. VBIRhoPal120395_3613.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000283 Genomic DNA. Translation: ABE40713.1 .
    RefSeqi YP_570614.1. NC_007958.1.

    3D structure databases

    ProteinModelPortali Q133M6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316057.RPD_3490.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE40713 ; ABE40713 ; RPD_3490 .
    GeneIDi 4024004.
    KEGGi rpd:RPD_3490.
    PATRICi 23282115. VBIRhoPal120395_3613.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RPAL316057:GHDC-3550-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BisB5Imported.

    Entry informationi

    Entry nameiQ133M6_RHOPS
    AccessioniPrimary (citable) accession number: Q133M6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3