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Q133M6

- Q133M6_RHOPS

UniProt

Q133M6 - Q133M6_RHOPS

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Protein
Submitted name: ATP dependent DNA ligase
Gene
RPD_3490
Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-3550-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPD_3490Imported
OrganismiRhodopseudomonas palustris (strain BisB5)Imported
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_3490.

Structurei

3D structure databases

ProteinModelPortaliQ133M6.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q133M6-1 [UniParc]FASTAAdd to Basket

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MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL    50
RLEYNGVFKS WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG 100
GGTVQLWDRG YWECDDPERG FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG 150
GKRTNWLLIK HRDDDAREGK ANDILDQDRS VASGRAMTEI AQGKGRAPKP 200
FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA PPNKAKATTA 250
KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG 300
HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT 350
EIVALDQHGH PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD 400
RKRRLQELLT AARGRRKQGL IRYVEHFDTG GDAILQSACK LSLEGIVSKK 450
LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK TNAGKFRSLL VGVHHDDHLA 500
YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT ADVHWLAPEL 550
VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR 600
AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS 650
RIGDAVNKRD LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA 700
MPGMSNLIAL AKVAGDRKPY VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY 750
EVPGRLVFDL DPAPEVGFDA VIVAAREMKD RLEAIGLPSF CKTTGGKGLH 800
VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS KQQRKGKIFL 850
DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA 900
LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA 930
Length:930
Mass (Da):101,391
Last modified:October 31, 2006 - v1
Checksum:iEA276BD0346EA711
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40713.1.
RefSeqiYP_570614.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE40713; ABE40713; RPD_3490.
GeneIDi4024004.
KEGGirpd:RPD_3490.
PATRICi23282115. VBIRhoPal120395_3613.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40713.1 .
RefSeqi YP_570614.1. NC_007958.1.

3D structure databases

ProteinModelPortali Q133M6.
ModBasei Search...

Protein-protein interaction databases

STRINGi 316057.RPD_3490.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE40713 ; ABE40713 ; RPD_3490 .
GeneIDi 4024004.
KEGGi rpd:RPD_3490.
PATRICi 23282115. VBIRhoPal120395_3613.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPAL316057:GHDC-3550-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5Imported.

Entry informationi

Entry nameiQ133M6_RHOPS
AccessioniPrimary (citable) accession number: Q133M6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 14, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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