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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPD_3490

Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-3550-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPD_3490Imported
OrganismiRhodopseudomonas palustris (strain BisB5)Imported
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_3490.

Structurei

3D structure databases

ProteinModelPortaliQ133M6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q133M6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL
60 70 80 90 100
RLEYNGVFKS WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG
110 120 130 140 150
GGTVQLWDRG YWECDDPERG FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG
160 170 180 190 200
GKRTNWLLIK HRDDDAREGK ANDILDQDRS VASGRAMTEI AQGKGRAPKP
210 220 230 240 250
FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA PPNKAKATTA
260 270 280 290 300
KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG
310 320 330 340 350
HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT
360 370 380 390 400
EIVALDQHGH PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD
410 420 430 440 450
RKRRLQELLT AARGRRKQGL IRYVEHFDTG GDAILQSACK LSLEGIVSKK
460 470 480 490 500
LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK TNAGKFRSLL VGVHHDDHLA
510 520 530 540 550
YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT ADVHWLAPEL
560 570 580 590 600
VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR
610 620 630 640 650
AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS
660 670 680 690 700
RIGDAVNKRD LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA
710 720 730 740 750
MPGMSNLIAL AKVAGDRKPY VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY
760 770 780 790 800
EVPGRLVFDL DPAPEVGFDA VIVAAREMKD RLEAIGLPSF CKTTGGKGLH
810 820 830 840 850
VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS KQQRKGKIFL
860 870 880 890 900
DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA
910 920 930
LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA
Length:930
Mass (Da):101,391
Last modified:October 31, 2006 - v1
Checksum:iEA276BD0346EA711
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000283 Genomic DNA. Translation: ABE40713.1.
RefSeqiWP_011503880.1. NC_007958.1.
YP_570614.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE40713; ABE40713; RPD_3490.
KEGGirpd:RPD_3490.
PATRICi23282115. VBIRhoPal120395_3613.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000283 Genomic DNA. Translation: ABE40713.1.
RefSeqiWP_011503880.1. NC_007958.1.
YP_570614.1. NC_007958.1.

3D structure databases

ProteinModelPortaliQ133M6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316057.RPD_3490.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE40713; ABE40713; RPD_3490.
KEGGirpd:RPD_3490.
PATRICi23282115. VBIRhoPal120395_3613.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-3550-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5Imported.

Entry informationi

Entry nameiQ133M6_RHOPS
AccessioniPrimary (citable) accession number: Q133M6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 27, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.