Q13127 (REST_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 115.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: RE1-silencing transcription factor Alternative name(s): Neural-restrictive silencer factor X2 box repressor | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1097 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier. Ref.1 Ref.2 Ref.3 Ref.11 |
| Subunit structure | |
| Subcellular location | Nucleus Probable. |
| Tissue specificity | Ubiquitous. Expressed at higher levels in the tissues of the lymphocytic compartment, including spleen, thymus, peripheral blood lymphocytes and ovary. Ref.3 |
| Sequence similarities | Contains 9 C2H2-type zinc fingers. |
| Sequence caution | The sequence AAA98503.1 differs from that shown. Reason: Frameshift at positions 188, 198, 202, 212 and 1087. The sequence AAC50114.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAC50115.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAH38985.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence BAD92987.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| SMARCA4 | P51532 | 2 | EBI-926706,EBI-302489 |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: Q13127-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q13127-2) The sequence of this isoform differs from the canonical sequence as follows: 301-313: ERPYKCELCPYSS → KRSFLVHKFSSLF 314-1097: Missing. | ||||||
| Isoform 3 (identifier: Q13127-3) Also known as: N4; The sequence of this isoform differs from the canonical sequence as follows: 329-329: E → W 330-1097: Missing. | ||||||
| Isoform 4 (identifier: Q13127-4) The sequence of this isoform differs from the canonical sequence as follows: 304-326: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1097 | 1097 | RE1-silencing transcription factor | PRO_0000269547 | |||||||
Regions | |||||||||||
| Zinc finger | 159 – 181 | 23 | C2H2-type 1 | ||||||||
| Zinc finger | 216 – 238 | 23 | C2H2-type 2 | ||||||||
| Zinc finger | 248 – 270 | 23 | C2H2-type 3 | ||||||||
| Zinc finger | 276 – 298 | 23 | C2H2-type 4 | ||||||||
| Zinc finger | 304 – 326 | 23 | C2H2-type 5 | ||||||||
| Zinc finger | 332 – 355 | 24 | C2H2-type 6 | ||||||||
| Zinc finger | 361 – 383 | 23 | C2H2-type 7 | ||||||||
| Zinc finger | 389 – 412 | 24 | C2H2-type 8 | ||||||||
| Zinc finger | 1060 – 1082 | 23 | C2H2-type 9 | ||||||||
| Region | 32 – 122 | 91 | Interaction with SIN3A | ||||||||
| Region | 43 – 57 | 15 | Interaction with SIN3B | ||||||||
| Region | 1009 – 1087 | 79 | Interaction with RCOR1 | ||||||||
| Compositional bias | 11 – 14 | 4 | Poly-Gly | ||||||||
| Compositional bias | 400 – 603 | 204 | Lys-rich | ||||||||
| Compositional bias | 595 – 815 | 221 | Pro-rich | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 864 | 1 | Phosphoserine Ref.13 | ||||||||
Natural variations | |||||||||||
| Alternative sequence | 301 – 313 | 13 | ERPYK…CPYSS → KRSFLVHKFSSLF in isoform 2. | VSP_022064 | |||||||
| Alternative sequence | 304 – 326 | 23 | Missing in isoform 4. | VSP_022067 | |||||||
| Alternative sequence | 314 – 1097 | 784 | Missing in isoform 2. | VSP_022065 | |||||||
| Alternative sequence | 329 | 1 | E → W in isoform 3. | VSP_022066 | |||||||
| Alternative sequence | 330 – 1097 | 768 | Missing in isoform 3. | VSP_022068 | |||||||
| Natural variant | 626 | 1 | V → I. Ref.7 Corresponds to variant rs2228991 [ dbSNP | Ensembl ]. | VAR_029795 | |||||||
| Natural variant | 692 | 1 | E → D. Corresponds to variant rs2227902 [ dbSNP | Ensembl ]. | VAR_029796 | |||||||
| Natural variant | 762 | 1 | K → Q. Corresponds to variant rs2227903 [ dbSNP | Ensembl ]. | VAR_029797 | |||||||
| Natural variant | 797 | 1 | P → L. Ref.3 Corresponds to variant rs3796529 [ dbSNP | Ensembl ]. | VAR_029798 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 295 | 1 | V → L in AAC50114. Ref.2 | ||||||||
| Sequence conflict | 596 – 599 | 4 | PQKE → SRNS in AAC50115. Ref.2 | ||||||||
| Sequence conflict | 630 | 1 | P → L in AAB17211. Ref.1 | ||||||||
Secondary structure | |||||||||||
Helix Strand Turn | |||||||||||
| Helix | 44 – 55 | 12 | |||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons." Chong J.A., Tapia-Ramirez J., Kim S., Toledo-Aral J.J., Zheng Y., Boutros M.C., Altshuller Y.M., Frohman M.A., Kraner S.D., Mandel G. Cell 80:949-957(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION. |
| [2] | "The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes." Schoenherr C.J., Anderson D.J. Science 267:1360-1363(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [MRNA] OF 1-599 (ISOFORM 1), FUNCTION. |
| [3] | "A zinc finger protein that represses transcription of the human MHC class II gene, DPA." Scholl T., Stevens M.B., Mahanta S., Strominger J.L. J. Immunol. 156:1448-1457(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, VARIANT LEU-797. |
| [4] | Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [5] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT ILE-626. Tissue: Testis and Uterus. |
| [8] | "Neuron-specific splicing of zinc finger transcription factor REST/NRSF/XBR is frequent in neuroblastomas and conserved in human, mouse and rat." Palm K., Metsis M., Timmusk T. Brain Res. Mol. Brain Res. 72:30-39(1999) [PubMed] [Europe PMC] [Abstract] Cited for: ALTERNATIVE SPLICING (ISOFORMS 3 AND 4). |
| [9] | "CoREST: a functional corepressor required for regulation of neural-specific gene expression." Andres M.E., Burger C., Peral-Rubio M.J., Battaglioli E., Anderson M.E., Grimes J., Dallman J., Ballas N., Mandel G. Proc. Natl. Acad. Sci. U.S.A. 96:9873-9878(1999) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RCOR1. |
| [10] | "The co-repressor mSin3A is a functional component of the REST-CoREST repressor complex." Grimes J.A., Nielsen S.J., Battaglioli E., Miska E.A., Speh J.C., Berry D.L., Atouf F., Holdener B.C., Mandel G., Kouzarides T. J. Biol. Chem. 275:9461-9467(2000) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RCOR1 AND SIN3A. |
| [11] | "Corepressor-dependent silencing of chromosomal regions encoding neuronal genes." Lunyak V.V., Burgess R., Prefontaine G.G., Nelson C., Sze S.-H., Chenoweth J., Schwartz P., Pevzner P.A., Glass C., Mandel G., Rosenfeld M.G. Science 298:1747-1752(2002) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [12] | Erratum Lunyak V.V., Burgess R., Prefontaine G.G., Nelson C., Sze S.-H., Chenoweth J., Schwartz P., Pevzner P.A., Glass C., Mandel G., Rosenfeld M.G. Science 299:1663-1663(2003) |
| [13] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-864, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix." Nomura M., Uda-Tochio H., Murai K., Mori N., Nishimura Y. J. Mol. Biol. 354:903-915(2005) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR OF 43-57 IN COMPLEX WITH SIN3B, INTERACTION WITH SIN3B. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | U22314 mRNA. Translation: AAB17211.1. U13877 mRNA. Translation: AAC50114.1. Different initiation. U13879 mRNA. Translation: AAC50115.1. Different initiation. U22680 mRNA. Translation: AAA98503.1. Frameshift. AB209750 mRNA. Translation: BAD92987.1. Different initiation. AC069307 Genomic DNA. No translation available. CH471057 Genomic DNA. Translation: EAX05517.1. BC038985 mRNA. Translation: AAH38985.1. Sequence problems. BC132859 mRNA. Translation: AAI32860.1. BC136491 mRNA. Translation: AAI36492.1. | ||||||||||||
| IPI | IPI00159969. IPI00816294. IPI00816510. IPI00816561. | ||||||||||||
| PIR | A56138. I38754. I38755. | ||||||||||||
| RefSeq | NP_001180437.1. NM_001193508.1. NP_005603.3. NM_005612.4. | ||||||||||||
| UniGene | Hs.307836. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q13127. | ||||||||||||
| SMR | Q13127. Positions 149-410. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-35264N. | ||||||||||||
| IntAct | Q13127. 3 interactions. | ||||||||||||
| STRING | 9606.ENSP00000311816. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q13127. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 296452989. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q13127. | ||||||||||||
| PRIDE | Q13127. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000309042; ENSP00000311816; ENSG00000084093. | ||||||||||||
| GeneID | 5978. | ||||||||||||
| KEGG | hsa:5978. | ||||||||||||
| UCSC | uc003hch.3. human. uc003hcj.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 5978. | ||||||||||||
| GeneCards | GC04P057689. | ||||||||||||
| H-InvDB | HIX0031381. | ||||||||||||
| HGNC | HGNC:9966. REST. | ||||||||||||
| HPA | HPA006079. | ||||||||||||
| MIM | 600571. gene. | ||||||||||||
| neXtProt | NX_Q13127. | ||||||||||||
| PharmGKB | PA34334. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG271556. | ||||||||||||
| HOVERGEN | HBG093893. | ||||||||||||
| InParanoid | Q13127. | ||||||||||||
| KO | K09222. | ||||||||||||
| OMA | VQKEPVQ. | ||||||||||||
| OrthoDB | EOG4NP73G. | ||||||||||||
| PhylomeDB | Q13127. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | Q13127. | ||||||||||||
| CleanEx | HS_REST. | ||||||||||||
| Genevestigator | Q13127. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.160.60. 4 hits. | ||||||||||||
| InterPro | IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view] | ||||||||||||
| SMART | SM00355. ZnF_C2H2. 9 hits. [Graphical view] | ||||||||||||
| PROSITE | PS00028. ZINC_FINGER_C2H2_1. 1 hit. PS50157. ZINC_FINGER_C2H2_2. 6 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | REST. human. | ||||||||||||
| EvolutionaryTrace | Q13127. | ||||||||||||
| GenomeRNAi | 5978. | ||||||||||||
| NextBio | 23267. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | REST_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q13127 Secondary accession number(s): A2RUE0 Q8IWI3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
