Q13042 (CDC16_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 121.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cell division cycle protein 16 homolog Alternative name(s): Anaphase-promoting complex subunit 6 Short name=APC6 CDC16 homolog Short name=CDC16Hs Cyclosome subunit 6 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 620 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Ref.11 |
| Pathway | |
| Subunit structure | The APC/C is composed of at least 12 subunits. Interacts with PPP5C and CDC20. Ref.7 Ref.8 |
| Subcellular location | Cytoplasm › cytoskeleton › centrosome. Cytoplasm › cytoskeleton › spindle. Note: Colocalizes with CDC27 to the centrosome at all stages of the cell cycle and to the mitotic spindle. Ref.1 |
| Post-translational modification | Phosphorylated. Phosphorylation on Ser-560 occurs specifically during mitosis. Ref.9 |
| Sequence similarities | Belongs to the APC6/CDC16 family. Contains 7 TPR repeats. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| CDC26 | Q8NHZ8 | 3 | EBI-994830,EBI-2555941 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q13042-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q13042-2) The sequence of this isoform differs from the canonical sequence as follows: 36-36: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q13042-3) The sequence of this isoform differs from the canonical sequence as follows: 36-36: Missing. 367-417: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 620 | 620 | Cell division cycle protein 16 homolog | PRO_0000106267 | ||||||||||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 130 – 163 | 34 | TPR 1 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 299 – 333 | 35 | TPR 2 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 334 – 367 | 34 | TPR 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 368 – 401 | 34 | TPR 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 403 – 435 | 33 | TPR 5 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 445 – 478 | 34 | TPR 6 | |||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 479 – 512 | 34 | TPR 7 | |||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 112 | 1 | Phosphoserine Ref.9 | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 490 | 1 | Phosphoserine Ref.9 | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 560 | 1 | Phosphoserine Ref.9 Ref.12 Ref.15 | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 581 | 1 | Phosphothreonine Ref.9 Ref.10 Ref.12 Ref.14 Ref.15 | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 595 | 1 | Phosphoserine Ref.9 | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 599 | 1 | Phosphothreonine Ref.9 | |||||||||||||||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 36 | 1 | Missing in isoform 2 and isoform 3. | VSP_008427 | ||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 367 – 417 | 51 | Missing in isoform 3. | VSP_008428 | ||||||||||||||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 138 | 1 | K → Q in AAC50200. Ref.1 | |||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 299 | 1 | P → L in AAD45156. Ref.2 | |||||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 234 – 243 | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 247 – 260 | 14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 265 – 267 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 268 – 278 | 11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 281 – 294 | 14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 300 – 311 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 316 – 327 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 335 – 347 | 13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 350 – 363 | 14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 364 – 366 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 369 – 380 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 384 – 395 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 402 – 414 | 13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 418 – 432 | 15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 433 – 435 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 440 – 443 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 446 – 457 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 461 – 474 | 14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 480 – 492 | 13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 495 – 503 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 504 – 508 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 513 – 524 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 525 – 528 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "CDC27Hs colocalizes with CDC16Hs to the centrosome and mitotic spindle and is essential for the metaphase to anaphase transition." Tugendreich S., Tomkiel J., Earnshaw W., Hieter P. Cell 81:261-268(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), SUBCELLULAR LOCATION. Tissue: Brain. |
| [2] | "The differential splicing variants of human CDC16 mRNA." Zhou P.K., Rigaud O. Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE (ISOFORM 3). |
| [3] | NIEHS SNPs program Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [4] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Skin. |
| [7] | "The serine/threonine phosphatase PP5 interacts with CDC16 and CDC27, two tetratricopeptide repeat-containing subunits of the anaphase-promoting complex." Ollendorff V., Donoghue D.J. J. Biol. Chem. 272:32011-32018(1997) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PPP5C. |
| [8] | "Mammalian p55CDC mediates association of the spindle checkpoint protein Mad2 with the cyclosome/anaphase-promoting complex, and is involved in regulating anaphase onset and late mitotic events." Kallio M., Weinstein J., Daum J.R., Burke D.J., Gorbsky G.J. J. Cell Biol. 141:1393-1406(1998) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CDC20. |
| [9] | "Mitotic regulation of the human anaphase-promoting complex by phosphorylation." Kraft C., Herzog F., Gieffers C., Mechtler K., Hagting A., Pines J., Peters J.-M. EMBO J. 22:6598-6609(2003) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION AT SER-112; SER-490; SER-560; THR-581; SER-595 AND THR-599. |
| [10] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-581, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex." Jin L., Williamson A., Banerjee S., Philipp I., Rape M. Cell 133:653-665(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE APC/C. |
| [12] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-560 AND THR-581, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-581, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-560 AND THR-581, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [17] | "Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C." Dube P., Herzog F., Gieffers C., Sander B., Riedel D., Mueller S.A., Engel A., Peters J.-M., Stark H. Mol. Cell 20:867-879(2005) [PubMed] [Europe PMC] [Abstract] Cited for: ELECTRON MICROSCOPY OF THE APC/C. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | U18291 mRNA. Translation: AAC50200.1. AF164598 mRNA. Translation: AAD45156.1. AY599074 Genomic DNA. Translation: AAS94323.1. AL160396 Genomic DNA. Translation: CAI15810.1. AL160396 Genomic DNA. Translation: CAM22287.1. CH471085 Genomic DNA. Translation: EAX09237.1. CH471085 Genomic DNA. Translation: EAX09244.1. BC017244 mRNA. Translation: AAH17244.1. | ||||||||||||
| IPI | IPI00022091. IPI00376312. IPI00376313. | ||||||||||||
| PIR | A56519. | ||||||||||||
| RefSeq | NP_001072113.1. NM_001078645.1. NP_003894.3. NM_003903.3. | ||||||||||||
| UniGene | Hs.374127. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q13042. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-36423N. | ||||||||||||
| IntAct | Q13042. 37 interactions. | ||||||||||||
| STRING | 9606.ENSP00000348554. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q13042. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 37537763. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q13042. | ||||||||||||
| PRIDE | Q13042. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 8881. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000252457; ENSP00000252457; ENSG00000130177. ENST00000356221; ENSP00000348554; ENSG00000130177. ENST00000360383; ENSP00000353549; ENSG00000130177. | ||||||||||||
| GeneID | 8881. | ||||||||||||
| KEGG | hsa:8881. | ||||||||||||
| UCSC | uc001vuk.1. human. uc001vun.1. human. uc001vuo.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 8881. | ||||||||||||
| GeneCards | GC13P115000. | ||||||||||||
| HGNC | HGNC:1720. CDC16. | ||||||||||||
| HPA | HPA042826. | ||||||||||||
| MIM | 603461. gene. | ||||||||||||
| neXtProt | NX_Q13042. | ||||||||||||
| PharmGKB | PA26256. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0457. | ||||||||||||
| HOGENOM | HOG000230908. | ||||||||||||
| HOVERGEN | HBG050857. | ||||||||||||
| InParanoid | Q13042. | ||||||||||||
| KO | K03353. | ||||||||||||
| OMA | HFLFENK. | ||||||||||||
| OrthoDB | EOG4DBTD7. | ||||||||||||
| PhylomeDB | Q13042. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Reactome | REACT_115566. Cell Cycle. REACT_21300. Mitotic M-M/G1 phases. REACT_6850. Cdc20:Phospho-APC/C mediated degradation of Cyclin A. REACT_6900. Immune System. REACT_8017. APC-Cdc20 mediated degradation of Nek2A. | ||||||||||||
| UniPathway | UPA00143. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q13042. | ||||||||||||
| Bgee | Q13042. | ||||||||||||
| CleanEx | HS_CDC16. | ||||||||||||
| Genevestigator | Q13042. | ||||||||||||
| GermOnline | ENSG00000130177. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.25.40.10. 2 hits. | ||||||||||||
| InterPro | IPR001440. TPR-1. IPR013026. TPR-contain_dom. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. [Graphical view] | ||||||||||||
| Pfam | PF00515. TPR_1. 2 hits. PF13181. TPR_8. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00028. TPR. 4 hits. [Graphical view] | ||||||||||||
| PROSITE | PS50005. TPR. 5 hits. PS50293. TPR_REGION. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | CDC16. human. | ||||||||||||
| EvolutionaryTrace | Q13042. | ||||||||||||
| GenomeRNAi | 8881. | ||||||||||||
| NextBio | 33347. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | CDC16_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q13042 Secondary accession number(s): A2A365 Q9Y564 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
