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Protein

30S ribosomal protein S11

Gene

rps11

Organism
Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Located on the platform of the 30S subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciMBUR259564:GHBZ-39-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S11UniRule annotation
Gene namesi
Name:rps11UniRule annotation
Ordered Locus Names:Mbur_0038
OrganismiMethanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Taxonomic identifieri259564 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanococcoides
Proteomesi
  • UP000001979 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12612630S ribosomal protein S11PRO_0000294895Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi259564.Mbur_0038.

Structurei

3D structure databases

ProteinModelPortaliQ12ZR4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S11P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04240. Archaea.
COG0100. LUCA.
HOGENOMiHOG000111598.
KOiK02948.
OMAiNKQRSPG.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11. 1 hit.
InterProiIPR001971. Ribosomal_S11.
IPR019961. Ribosomal_S11_archaeal.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03628. arch_S11P. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q12ZR4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANGIWGVAH IKCSFNNTII TVTDLTGAET IAKSSGGMVV KAARDESSPY
60 70 80 90 100
TAMQMATQLA DILRDKGLEG VHIKVRAPGG NKQRSPGPGA QAAIRAFARA
110 120
GVRIGRIEDV TPVPHDGTRP KGGRRV
Length:126
Mass (Da):13,230
Last modified:August 22, 2006 - v1
Checksum:i343756B418652496
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA. Translation: ABE51062.1.
RefSeqiWP_011498226.1. NC_007955.1.

Genome annotation databases

EnsemblBacteriaiABE51062; ABE51062; Mbur_0038.
GeneIDi3996902.
KEGGimbu:Mbur_0038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA. Translation: ABE51062.1.
RefSeqiWP_011498226.1. NC_007955.1.

3D structure databases

ProteinModelPortaliQ12ZR4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi259564.Mbur_0038.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE51062; ABE51062; Mbur_0038.
GeneIDi3996902.
KEGGimbu:Mbur_0038.

Phylogenomic databases

eggNOGiarCOG04240. Archaea.
COG0100. LUCA.
HOGENOMiHOG000111598.
KOiK02948.
OMAiNKQRSPG.

Enzyme and pathway databases

BioCyciMBUR259564:GHBZ-39-MONOMER.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11. 1 hit.
InterProiIPR001971. Ribosomal_S11.
IPR019961. Ribosomal_S11_archaeal.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03628. arch_S11P. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS11_METBU
AccessioniPrimary (citable) accession number: Q12ZR4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: August 22, 2006
Last modified: December 9, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.