Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA-directed RNA polymerase subunit L

Gene

rpoL

Organism
Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciMBUR259564:GHBZ-1466-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit LUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoLUniRule annotation
Ordered Locus Names:Mbur_1439
OrganismiMethanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Taxonomic identifieri259564 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanococcoides
Proteomesi
  • UP000001979 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9191DNA-directed RNA polymerase subunit LPRO_1000005781Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi259564.Mbur_1439.

Structurei

3D structure databases

ProteinModelPortaliQ12W27.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04111. Archaea.
COG1761. LUCA.
HOGENOMiHOG000179862.
KOiK03056.
OMAiSYDMKHV.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L. 1 hit.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q12W27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELKILEKSD DEMKMEIAGE SHTLLNMLKI ILLEDERVHT ASYDMKHVTI
60 70 80 90
SEPVLFIKTE NADPIDVVKA AVAKLITECE EFVTVFNKAV E
Length:91
Mass (Da):10,334
Last modified:August 22, 2006 - v1
Checksum:iC35A184E62330827
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA. Translation: ABE52349.1.
RefSeqiWP_011499494.1. NC_007955.1.

Genome annotation databases

EnsemblBacteriaiABE52349; ABE52349; Mbur_1439.
GeneIDi3998467.
KEGGimbu:Mbur_1439.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA. Translation: ABE52349.1.
RefSeqiWP_011499494.1. NC_007955.1.

3D structure databases

ProteinModelPortaliQ12W27.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi259564.Mbur_1439.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE52349; ABE52349; Mbur_1439.
GeneIDi3998467.
KEGGimbu:Mbur_1439.

Phylogenomic databases

eggNOGiarCOG04111. Archaea.
COG1761. LUCA.
HOGENOMiHOG000179862.
KOiK03056.
OMAiSYDMKHV.

Enzyme and pathway databases

BioCyciMBUR259564:GHBZ-1466-MONOMER.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L. 1 hit.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRPOL_METBU
AccessioniPrimary (citable) accession number: Q12W27
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: August 22, 2006
Last modified: December 9, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.