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Reviewed, UniProtKB/Swiss-Prot Q12UG6 (PGP_METBU)

Last modified June 16, 2009. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Phosphoglycolate phosphatase
      Short name=PGPase
      Short name=PGP
    EC=3.1.3.18
Gene names
Ordered Locus Names: Mbur_2034
OrganismMethanococcoides burtonii (strain DSM 6242) [Complete proteome] [HAMAP]
Taxonomic identifier259564 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Methanomicrobia › Methanosarcinales › Methanosarcinaceae › Methanococcoides

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Protein attributes

Sequence length226 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Function

Catalyzes the dephosphorylation of 2-phosphoglycolate By similarity.

Catalytic activity

2-phosphoglycolate + H2O = glycolate + phosphate. HAMAP MF_01419

Cofactor

Magnesium By similarity.

Sequence similarities

Belongs to the archaeal SPP-like hydrolase family.

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Ontologies

Keywords
   Biological processCarbohydrate metabolism
   LigandMagnesium
Metal-binding
   Molecular functionHydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionmagnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

phosphoglycolate phosphatase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 226226Phosphoglycolate phosphatase HAMAP MF_01419
PRO_1000024289

Sites

Active site91Nucleophile By similarity
Metal binding91Magnesium By similarity
Metal binding111Magnesium By similarity
Metal binding1731Magnesium By similarity
Metal binding1771Magnesium By similarity
Binding site1501Substrate By similarity

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Sequences

Sequence LengthMass (Da)Tools
Q12UG6-1 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: C2B2DD05D6645E8C

FASTA22624,084
        10         20         30         40         50         60 
MVLKAIVIDI DGTITNPDRS LDLDVAKRFR ELNVPVILST GNPLCYVHAA AKLIGISGIV 

        70         80         90        100        110        120 
IAENGGVIST GFDSPSIIAD GKEECEKAYE LLSQYHDLVK LDDAYRKTEV VLNRDVAVED 

       130        140        150        160        170        180 
LRSTLSENGI DIEIIDTGYA IHIKSTAMNK GTGLLKVAEL MGLEPTDYLA IGDSCNDAEM 

       190        200        210        220 
MQVAGFGIAV ANADSDAIKA ARHITKASFG KGALEAIEYA LSNGLL

« Hide

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References

[1]"Complete sequence of Methanococcoides burtonii DSM 6242."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Kadner K., Aerts A., Dehal P., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Anderson I., Franzmann P., Thomas T., Saunders N., Cavicchioli R., Sowers K., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000300 Genomic DNA. Translation: ABE52910.1.
RefSeqYP_566660.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3997416.
GenomeReviewsGene locus Mbur_2034 in contig CP000300_GR.
KEGGmbu:Mbur_2034.
NMPDRfig|259564.8.peg.1944.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ12UG6.
OMAQ12UG6. NKCRKYD.

Enzyme and pathway databases

BioCycMBUR259564:MBUR_2034-MON.

Family and domain databases

HAMAPMF_01419.
[Tree]
InterProIPR013200. HAD-SF_hydro-like_3.
IPR006379. HAD-SF_hydro_IIB.
IPR006382. SPPlik_hydro_arc.
IPR006378. Suc_phosP.
[Graphical view]
PfamPF08282. Hydrolase_3. 2 hits.
[Graphical view]
TIGRFAMsTIGR01484. HAD-SF-IIB. 1 hit.
TIGR01487. SPP-like. 1 hit.
TIGR01482. SPP-subfamily. 1 hit.
ProtoNetSearch...

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Entry information

Entry namePGP_METBU
AccessionPrimary (citable) accession number: Q12UG6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: August 22, 2006
Last modified: June 16, 2009
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents