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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.IEP:

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13IEP:
Gene namesi
Name:rpl13IEP:
Ordered Locus Names:Mbur_2389
OrganismiMethanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Taxonomic identifieri259564 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanococcoides
Proteomesi
  • UP000001979 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618371 – 13950S ribosomal protein L13Add BLAST139

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.IEP:

Protein-protein interaction databases

STRINGi259564.Mbur_2389.

Structurei

3D structure databases

ProteinModelPortaliQ12TI6.
SMRiQ12TI6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.IEP:

Phylogenomic databases

eggNOGiarCOG04242. Archaea.
COG0102. LUCA.
HOGENOMiHOG000225287.
KOiK02871.
OMAiRYHNFLH.
OrthoDBiPOG093Z0DQ4.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Q12TI6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVIDANGLI MGRLASNVAK MLLSGEEVSI VNAERAVISG SKVTTFEEYD
60 70 80 90 100
VIRNMGTREF GPYFPRRPDR ILKRTVRGML PYKRARGKDA MGRLKVYVGI
110 120 130
PYEYQDAEFV SVEGAEMTRL SSNKYVTIGD VSRQLGSKF
Length:139
Mass (Da):15,592
Last modified:August 22, 2006 - v1
Checksum:iE82D1969DB2B954D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA. Translation: ABE53240.1.
RefSeqiWP_011500375.1. NC_007955.1.

Genome annotation databases

EnsemblBacteriaiABE53240; ABE53240; Mbur_2389.
GeneIDi3998976.
KEGGimbu:Mbur_2389.

Similar proteinsi

Entry informationi

Entry nameiRL13_METBU
AccessioniPrimary (citable) accession number: Q12TI6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: August 22, 2006
Last modified: October 25, 2017
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families