Reviewed, UniProtKB/Swiss-Prot Q12RA0 (MAO1_SHEDO)

Names and origin

Protein names

Recommended name:
    NAD-dependent malic enzyme
      Short name=NAD-ME
    EC=1.1.1.38

Gene names

Name:	sfcA
Ordered Locus Names:	Sden_0736

Organism

Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) [Complete proteome] [HAMAP]

Taxonomic identifier

318161 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	(S)-malate + NAD+ = pyruvate + CO2 + NADH. HAMAP MF_01619
Cofactor	Divalent metal cations. Prefers magnesium or manganese By similarity. HAMAP MF_01619
Subunit structure	Homotetramer By similarity. HAMAP MF_01619
Sequence similarities	Belongs to the malic enzymes family.

Ontologies

Keywords
Ligand	Metal-binding NAD
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	malate metabolic process Inferred from electronic annotation. Source: InterPro oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	NAD or NADH binding Inferred from electronic annotation. Source: InterPro malate dehydrogenase (oxaloacetate-decarboxylating) activity Inferred from electronic annotation. Source: HAMAP metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 562	562	NAD-dependent malic enzyme HAMAP MF_01619		PRO_1000069541
Sites
	Active site	101	1	Proton donor By similarity
	Active site	172	1	Proton acceptor By similarity
	Metal binding	243	1	Divalent metal cation By similarity
	Metal binding	244	1	Divalent metal cation By similarity
	Metal binding	267	1	Divalent metal cation By similarity
	Binding site	154	1	NAD By similarity
	Binding site	267	1	NAD By similarity
	Binding site	415	1	NAD By similarity
	Site	267	1	Important for activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q12RA0-1 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 942252D30AF25265	FASTA	562	62,265
	10 20 30 40 50 60 MDDTKRPLYL PFAGPAILEA PLINKGSAFS EEERIFFNLE GLLPYVIETI EEQAARAYAQ 70 80 90 100 110 120 FSNFSNDLDK HIYLRNIQDT NETLFYRLVR NNITEMMPII YTPTVGLACE RFSKNYRRNR 130 140 150 160 170 180 GLFISYSNKD RIDDILNNST RHKVKVIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG 190 200 210 220 230 240 GISPAYTLPI TLDVGTDNQE LLDDPMYMGW RHRRIEGQDY ADFVEAFMEA VHRRWPDVLI 250 260 270 280 290 300 QFEDFAQRNA MPLLERYKDQ YCCFNDDIQG TAAVTVGSLL AASKAANTQL SKQRVVFLGA 310 320 330 340 350 360 GSAGCGIAEA IVAQMISEGI SEAQARSQVF MVDRLGLLQD NTANLLPFQQ KLAQSSATVS 370 380 390 400 410 420 QWHIEGDSVS LLNVINNAKP TVLIGVSGSP GQFTEAVIRA MHLHCPRPIV FPLSNPTSRV 430 440 450 460 470 480 EATPEDVLNW TNGQALVATG SPFEPVTIGD ETFEIAQCNN SFIFPGIGLG VLACRAKRVS 490 500 510 520 530 540 DEMLMASSRA LAECSPLGTT RTGSLLPKLD DIQKVSKYIA FAVAKVAMAQ GLALPLTDEL 550 560 LNKSIEKNFW EPKYRRYKRT SF

References

[1]

"Complete sequence of Shewanella denitrificans OS217." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000302 Genomic DNA. Translation: ABE54026.1.
RefSeq	YP_561749.1.
3D structure databases
SMR	Q12RA0. Positions 13-562.
ModBase	Search...
Protein-protein interaction databases
STRING	Q12RA0.
Genome annotation databases
GeneID	4016842.
GenomeReviews	Gene locus Sden_0736 in contig CP000302_GR.
KEGG	sdn:Sden_0736.
NMPDR	fig|318161.14.peg.718.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0281.
HOGENOM	HBG289821.
OMA	IQDNNET.
PhylomeDB	Q12RA0.
Family and domain databases
HAMAP	MF_01619. NAD_malic_enz. [Tree]
InterPro	IPR015884. Malic_enzyme_CS. IPR012301. Malic_N. IPR012302. Malic_NAD_bd. IPR001891. Malic_OxRdtase. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
Pfam	PF00390. malic. 1 hit. PF03949. Malic_M. 1 hit. [Graphical view]
PRINTS	PR00072. MALOXRDTASE.
PROSITE	PS00331. MALIC_ENZYMES. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

MAO1_SHEDO

Accession

Primary (citable) accession number: Q12RA0

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	August 22, 2006
Last modified:	January 19, 2010
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)