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Q12QG3 (Q12QG3_SHEDO) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00592
Short name=DERA HAMAP MF_00592
EC=4.1.2.4 HAMAP MF_00592
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00592
Phosphodeoxyriboaldolase HAMAP MF_00592
Gene names
Name:deoC HAMAP MF_00592
Ordered Locus Names:Sden_1025
OrganismShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) [Complete proteome] [HAMAP] EMBL ABE54313.1
Taxonomic identifier318161 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length258 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS023649 HAMAP MF_00592

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS023649 HAMAP MF_00592

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS023649 HAMAP MF_00592

Subcellular location

Cytoplasm By similarity HAMAP MF_00592.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily. HAMAP MF_00592

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1671Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00592
Active site1991 By similarity HAMAP MF_00592

Sequences

Sequence LengthMass (Da)Tools
Q12QG3 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 986C981DC0F30317

FASTA25827,577
        10         20         30         40         50         60 
MMSDLKKAAQ LGIQLMDLTT LNDDDTDQKV IDLCHKAVTA AGHTAAICIY PRFIPIARKT 

        70         80         90        100        110        120 
LNELDAEDIK IATVTNFPHG NDDIAIAVLE TRAAVAYGAD EVDVVFPYRA LMDGDETTGF 

       130        140        150        160        170        180 
ELVKACKEAC GDEAILKVII ESGELKNPAL IRKASELAID AGADFIKTST GKVPVNATLE 

       190        200        210        220        230        240 
AAEIMLTVIK EKNTKVGFKP AGGVRDAAQT AEFLALAERI LGADWATPST FRFGASSLLN 

       250 
SLLHTLELAE AAKPNQGY

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References

[1]"Complete sequence of Shewanella denitrificans OS217."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS217 / ATCC BAA-1090 / DSM 15013.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000302 Genomic DNA. Translation: ABE54313.1.
RefSeqYP_562036.1. NC_007954.1.

3D structure databases

ProteinModelPortalQ12QG3.
SMRQ12QG3. Positions 2-234.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ12QG3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4017070.
GenomeReviewsGene locus Sden_1025 in contig CP000302_GR.
KEGGsdn:Sden_1025.
NMPDRfig|318161.14.peg.1006.
PATRIC23487776. VBISheDen79529_1086.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0274.
HOGENOMHBG636421.
OMAFELVKQC.
PhylomeDBQ12QG3.
ProtClustDBPRK05283.

Enzyme and pathway databases

BioCycSDEN318161:SDEN_1025-MONOMER.

Family and domain databases

HAMAPMF_00592. DeoC_type2.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR023649. DeoC_bac.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ12QG3_SHEDO
AccessionPrimary (citable) accession number: Q12QG3
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: December 14, 2011
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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