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Protein
Submitted name:

Aminotransferase

Gene

Sden_1668

Organism
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseUniRule annotationImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSDEN318161:GHKQ-1728-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
AminotransferaseImported (EC:2.6.1.-Imported)
Gene namesi
Ordered Locus Names:Sden_1668Imported
OrganismiShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)Imported
Taxonomic identifieri318161 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000001982 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi318161.Sden_1668.

Structurei

3D structure databases

ProteinModelPortaliQ12NM4.
SMRiQ12NM4. Positions 2-397.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 393366Aminotran_1_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CGF. Bacteria.
COG1448. LUCA.
HOGENOMiHOG000185899.
KOiK00832.
OMAiRVGACTI.
OrthoDBiEOG6C2WBK.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR000796. Asp_trans.
IPR004838. NHTrfase_class1_PyrdxlP-BS.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11879. PTHR11879. 1 hit.
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
PRINTSiPR00799. TRANSAMINASE.
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00105. AA_TRANSFER_CLASS_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q12NM4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIFTDMLLAP ADPILGLNDA FNADPRQDKV NLGVGIYKTD AGLTPVLSSV
60 70 80 90 100
KKAEALLLAE EKTKNYLGIE GVKAYNAAVQ ALLFGPSHKV IQDKRVVTAQ
110 120 130 140 150
APGGTGSLRI AAEFLVRQTK TRHVWVSNPT WANHQNIFET AGLICKEYRY
160 170 180 190 200
YDAASHDLDF DAMLDDLSKA NAGDLVLLHA CCHNPSGIDL NLSQWQQVAS
210 220 230 240 250
LCLDKGLVPF LDFAYQGFGA GIEEDAAGLR VLADTVPELI VANSFSKNFG
260 270 280 290 300
LYNERIGAVT LVAQDEDTAV RSFSQIKKTI RATYSNPPAH GGLIVSTILA
310 320 330 340 350
NPELRQEWES ELTQMRERIA KMRLLFVERL KQAGVTQDFS FISRQTGMFS
360 370 380 390
FSGLNKEQVM RLREEFGIYI VGSGRISVAG MTTNNMDKIC QAIAQVL
Length:397
Mass (Da):43,593
Last modified:August 22, 2006 - v1
Checksum:iE5C162693ADE883A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE54952.1.
RefSeqiWP_011496110.1. NC_007954.1.

Genome annotation databases

EnsemblBacteriaiABE54952; ABE54952; Sden_1668.
KEGGisdn:Sden_1668.
PATRICi23489197. VBISheDen79529_1773.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE54952.1.
RefSeqiWP_011496110.1. NC_007954.1.

3D structure databases

ProteinModelPortaliQ12NM4.
SMRiQ12NM4. Positions 2-397.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318161.Sden_1668.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE54952; ABE54952; Sden_1668.
KEGGisdn:Sden_1668.
PATRICi23489197. VBISheDen79529_1773.

Phylogenomic databases

eggNOGiENOG4105CGF. Bacteria.
COG1448. LUCA.
HOGENOMiHOG000185899.
KOiK00832.
OMAiRVGACTI.
OrthoDBiEOG6C2WBK.

Enzyme and pathway databases

BioCyciSDEN318161:GHKQ-1728-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR000796. Asp_trans.
IPR004838. NHTrfase_class1_PyrdxlP-BS.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11879. PTHR11879. 1 hit.
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
PRINTSiPR00799. TRANSAMINASE.
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00105. AA_TRANSFER_CLASS_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OS217 / ATCC BAA-1090 / DSM 15013Imported.

Entry informationi

Entry nameiQ12NM4_SHEDO
AccessioniPrimary (citable) accession number: Q12NM4
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: March 16, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.