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Protein
Submitted name:

Alpha amylase, catalytic region

Gene

Sden_1800

Organism
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic regionImported
Gene namesi
Ordered Locus Names:Sden_1800Imported
OrganismiShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)Imported
Taxonomic identifieri318161 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000001982 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 37Sequence analysisAdd BLAST37
ChainiPRO_500418157038 – 627Sequence analysisAdd BLAST590

Interactioni

Protein-protein interaction databases

STRINGi318161.Sden_1800.

Structurei

3D structure databases

ProteinModelPortaliQ12N92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini528 – 627CBM20 (carbohydrate binding type-20)InterPro annotationAdd BLAST100

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiEYWSGDI.
OrthoDBiPOG091H0HQ3.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q12N92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASNTKIII KKRTSFRLTF ALVAGLSALG LSSSASSAEN GVMMQYFHWY
60 70 80 90 100
TPADGKLWTQ VQQESSALAA AGFTALWLPP AYKGASGALD VGYGVYDMYD
110 120 130 140 150
LGEFNQKGAV RTKYGTKSQY VSAINTAHTQ GLQVYGDLVF NHRGGADATE
160 170 180 190 200
SVTAVRVARD NRDREFGADV QIDAWTRFDF TARQNQHSAF KWRWYHFDGV
210 220 230 240 250
DWAQNLTESN IFKFRGTGKG WDWEVDTENV NYDYLMYADL DFNHPEVVQE
260 270 280 290 300
LKDWGDWYLS QTQVDGFRLD AIKHIRYEFF NDWLDYMRAN SGKTLFTVGE
310 320 330 340 350
FWSYDTAKLH NYINKTSGRM SLFDAPLHLN FHQASTANGN YDMRRIWDNS
360 370 380 390 400
LMKEQPNLAV TLVENHDTQA CQALASPVND WFKPLAYAFI LLRSQGYPNV
410 420 430 440 450
FYADYYGANY TSSDNSCNNS VITMVSHKTK IDQLLKARKD YAYGPQIDYL
460 470 480 490 500
DHWDIIGWTR LGDTSHPKAM AVIMSDGASG TKWMNVNRTS TRFMDITGHR
510 520 530 540 550
SETVTTNADG WGQFPVNGGS YSVWVEQATS TSTVAVTFNC NNGVTYAGQD
560 570 580 590 600
VYVVGNQANL GNWNTAAAIK LSPTGYPSWS GTINLPMSKA IEWKCIKKSA
610 620
TEVVWQGGGN NTYTTPSSGV GSTSASF
Length:627
Mass (Da):70,195
Last modified:August 22, 2006 - v1
Checksum:iE9D718EE376EFF11
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE55084.1.

Genome annotation databases

EnsemblBacteriaiABE55084; ABE55084; Sden_1800.
KEGGisdn:Sden_1800.
PATRICi23489485. VBISheDen79529_1912.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE55084.1.

3D structure databases

ProteinModelPortaliQ12N92.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318161.Sden_1800.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE55084; ABE55084; Sden_1800.
KEGGisdn:Sden_1800.
PATRICi23489485. VBISheDen79529_1912.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiEYWSGDI.
OrthoDBiPOG091H0HQ3.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ12N92_SHEDO
AccessioniPrimary (citable) accession number: Q12N92
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: November 30, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.