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Q12N92

- Q12N92_SHEDO

UniProt

Q12N92 - Q12N92_SHEDO

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Protein
Submitted name: Alpha amylase, catalytic region
Gene
Sden_1800
Organism
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro
  3. starch binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSDEN318161:GHKQ-1866-MONOMER.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic regionImported
Gene namesi
Ordered Locus Names:Sden_1800Imported
OrganismiShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)Imported
Taxonomic identifieri318161 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001982: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3838 PredictedImported
Add
BLAST
Chaini39 – 627589 PredictedImported
PRO_5000114589Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi318161.Sden_1800.

Structurei

3D structure databases

ProteinModelPortaliQ12N92.
SMRiQ12N92. Positions 40-525.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiTWITNEL.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q12N92-1 [UniParc]FASTAAdd to Basket

« Hide

MAASNTKIII KKRTSFRLTF ALVAGLSALG LSSSASSAEN GVMMQYFHWY    50
TPADGKLWTQ VQQESSALAA AGFTALWLPP AYKGASGALD VGYGVYDMYD 100
LGEFNQKGAV RTKYGTKSQY VSAINTAHTQ GLQVYGDLVF NHRGGADATE 150
SVTAVRVARD NRDREFGADV QIDAWTRFDF TARQNQHSAF KWRWYHFDGV 200
DWAQNLTESN IFKFRGTGKG WDWEVDTENV NYDYLMYADL DFNHPEVVQE 250
LKDWGDWYLS QTQVDGFRLD AIKHIRYEFF NDWLDYMRAN SGKTLFTVGE 300
FWSYDTAKLH NYINKTSGRM SLFDAPLHLN FHQASTANGN YDMRRIWDNS 350
LMKEQPNLAV TLVENHDTQA CQALASPVND WFKPLAYAFI LLRSQGYPNV 400
FYADYYGANY TSSDNSCNNS VITMVSHKTK IDQLLKARKD YAYGPQIDYL 450
DHWDIIGWTR LGDTSHPKAM AVIMSDGASG TKWMNVNRTS TRFMDITGHR 500
SETVTTNADG WGQFPVNGGS YSVWVEQATS TSTVAVTFNC NNGVTYAGQD 550
VYVVGNQANL GNWNTAAAIK LSPTGYPSWS GTINLPMSKA IEWKCIKKSA 600
TEVVWQGGGN NTYTTPSSGV GSTSASF 627
Length:627
Mass (Da):70,195
Last modified:August 22, 2006 - v1
Checksum:iE9D718EE376EFF11
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000302 Genomic DNA. Translation: ABE55084.1.
RefSeqiYP_562807.1. NC_007954.1.

Genome annotation databases

EnsemblBacteriaiABE55084; ABE55084; Sden_1800.
GeneIDi4018282.
KEGGisdn:Sden_1800.
PATRICi23489485. VBISheDen79529_1912.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000302 Genomic DNA. Translation: ABE55084.1 .
RefSeqi YP_562807.1. NC_007954.1.

3D structure databases

ProteinModelPortali Q12N92.
SMRi Q12N92. Positions 40-525.
ModBasei Search...

Protein-protein interaction databases

STRINGi 318161.Sden_1800.

Protein family/group databases

CAZyi CBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE55084 ; ABE55084 ; Sden_1800 .
GeneIDi 4018282.
KEGGi sdn:Sden_1800.
PATRICi 23489485. VBISheDen79529_1912.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000094847.
KOi K01176.
OMAi TWITNEL.
OrthoDBi EOG65QWH3.

Enzyme and pathway databases

BioCyci SDEN318161:GHKQ-1866-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR015237. Alpha-amylase_C_pro.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view ]
SMARTi SM00642. Aamy. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view ]
SUPFAMi SSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEi PS51166. CBM20. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OS217 / ATCC BAA-1090 / DSM 15013.

Entry informationi

Entry nameiQ12N92_SHEDO
AccessioniPrimary (citable) accession number: Q12N92
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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