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Q12N92 (Q12N92_SHEDO) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sden_1800 EMBL ABE55084.1
OrganismShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) [Complete proteome] [HAMAP] EMBL ABE55084.1
Taxonomic identifier318161 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length627 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3838 Potential EMBL ABE55084.1
Chain39 – 627589 Potential EMBL ABE55084.1
PRO_5000114589

Sequences

Sequence LengthMass (Da)Tools
Q12N92 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: E9D718EE376EFF11

FASTA62770,195
        10         20         30         40         50         60 
MAASNTKIII KKRTSFRLTF ALVAGLSALG LSSSASSAEN GVMMQYFHWY TPADGKLWTQ 

        70         80         90        100        110        120 
VQQESSALAA AGFTALWLPP AYKGASGALD VGYGVYDMYD LGEFNQKGAV RTKYGTKSQY 

       130        140        150        160        170        180 
VSAINTAHTQ GLQVYGDLVF NHRGGADATE SVTAVRVARD NRDREFGADV QIDAWTRFDF 

       190        200        210        220        230        240 
TARQNQHSAF KWRWYHFDGV DWAQNLTESN IFKFRGTGKG WDWEVDTENV NYDYLMYADL 

       250        260        270        280        290        300 
DFNHPEVVQE LKDWGDWYLS QTQVDGFRLD AIKHIRYEFF NDWLDYMRAN SGKTLFTVGE 

       310        320        330        340        350        360 
FWSYDTAKLH NYINKTSGRM SLFDAPLHLN FHQASTANGN YDMRRIWDNS LMKEQPNLAV 

       370        380        390        400        410        420 
TLVENHDTQA CQALASPVND WFKPLAYAFI LLRSQGYPNV FYADYYGANY TSSDNSCNNS 

       430        440        450        460        470        480 
VITMVSHKTK IDQLLKARKD YAYGPQIDYL DHWDIIGWTR LGDTSHPKAM AVIMSDGASG 

       490        500        510        520        530        540 
TKWMNVNRTS TRFMDITGHR SETVTTNADG WGQFPVNGGS YSVWVEQATS TSTVAVTFNC 

       550        560        570        580        590        600 
NNGVTYAGQD VYVVGNQANL GNWNTAAAIK LSPTGYPSWS GTINLPMSKA IEWKCIKKSA 

       610        620 
TEVVWQGGGN NTYTTPSSGV GSTSASF 

« Hide

References

[1]"Complete sequence of Shewanella denitrificans OS217."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS217 / ATCC BAA-1090 / DSM 15013.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000302 Genomic DNA. Translation: ABE55084.1.
RefSeqYP_562807.1. NC_007954.1.

3D structure databases

ProteinModelPortalQ12N92.
SMRQ12N92. Positions 40-525.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING318161.Sden_1800.

Protein family/group databases

CAZyCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE55084; ABE55084; Sden_1800.
GeneID4018282.
KEGGsdn:Sden_1800.
PATRIC23489485. VBISheDen79529_1912.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000094847.
KOK01176.
OMATWITNEL.
OrthoDBEOG65QWH3.

Enzyme and pathway databases

BioCycSDEN318161:GHKQ-1866-MONOMER.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR015237. Alpha-amylase_C_pro.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ12N92_SHEDO
AccessionPrimary (citable) accession number: Q12N92
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)