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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Sden_2434

Organism
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSDEN318161:GHKQ-2517-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Sden_2434Imported
OrganismiShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)Imported
Taxonomic identifieri318161 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001982 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi318161.Sden_2434.

Structurei

3D structure databases

ProteinModelPortaliQ12LG2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q12LG2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMAQLMTSIT PRKAQASEDS MLRIFTVPED AESTLSIIEQ KLSEDLAGFL
60 70 80 90 100
GNSIAALEKP LSEIETDFQA FQIPTAPRFV SDYTDEIMQN LVAHSVHTAA
110 120 130 140 150
PSFIGHMTSA LPYFVLPLSK MMVGLNQNLV KIETSKAFTP LERQVLGMMH
160 170 180 190 200
HLVFSQDGDF YQQWMHSANH SLGAFCSGGT VANITALWIA RNRLLKADGN
210 220 230 240 250
FNGVNREGML KALRHYGFDD IAILVSERGH YSLGKAVDLL GIGRDNIISI
260 270 280 290 300
ATTADNKVDV EAMRLAAKAL ASKNIKVMAV VGVAGTTETG NIDPLTELAA
310 320 330 340 350
LAQELDCHFH VDAAWGGASL LSKKYRHLLK GIELADSVTI DAHKQMYVPM
360 370 380 390 400
GAGMVLFKDP ELANAIVHHA EYILRVGSKD LGSQTLEGSR PGMAMIVHAC
410 420 430 440 450
LQIIGLEGYE ILINNSLEKA RYFSELIKKS PDFELITEPE LCILTYRYVP
460 470 480 490 500
STVQLAMSDA CQRQDWHALA QFNECLDGLT QFIQKHQREQ GKSFVSRTRI
510 520 530 540 550
QPARYNRQHT TVFRVVLANP LTGLEILQGV LAEQQEIAAL DNEFLPQLLA

LASA
Length:554
Mass (Da):61,051
Last modified:August 22, 2006 - v1
Checksum:iD88A76BE04DB46D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE55714.1.
RefSeqiWP_011496865.1. NC_007954.1.
YP_563437.1. NC_007954.1.

Genome annotation databases

EnsemblBacteriaiABE55714; ABE55714; Sden_2434.
KEGGisdn:Sden_2434.
PATRICi23490817. VBISheDen79529_2563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000302 Genomic DNA. Translation: ABE55714.1.
RefSeqiWP_011496865.1. NC_007954.1.
YP_563437.1. NC_007954.1.

3D structure databases

ProteinModelPortaliQ12LG2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318161.Sden_2434.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE55714; ABE55714; Sden_2434.
KEGGisdn:Sden_2434.
PATRICi23490817. VBISheDen79529_2563.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciSDEN318161:GHKQ-2517-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OS217 / ATCC BAA-1090 / DSM 15013Imported.

Entry informationi

Entry nameiQ12LG2_SHEDO
AccessioniPrimary (citable) accession number: Q12LG2
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 27, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.