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Q12LG2 (Q12LG2_SHEDO) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sden_2434 EMBL ABE55714.1
OrganismShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) [Complete proteome] [HAMAP] EMBL ABE55714.1
Taxonomic identifier318161 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length554 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q12LG2 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: D88A76BE04DB46D9

FASTA55461,051
        10         20         30         40         50         60 
MMAQLMTSIT PRKAQASEDS MLRIFTVPED AESTLSIIEQ KLSEDLAGFL GNSIAALEKP 

        70         80         90        100        110        120 
LSEIETDFQA FQIPTAPRFV SDYTDEIMQN LVAHSVHTAA PSFIGHMTSA LPYFVLPLSK 

       130        140        150        160        170        180 
MMVGLNQNLV KIETSKAFTP LERQVLGMMH HLVFSQDGDF YQQWMHSANH SLGAFCSGGT 

       190        200        210        220        230        240 
VANITALWIA RNRLLKADGN FNGVNREGML KALRHYGFDD IAILVSERGH YSLGKAVDLL 

       250        260        270        280        290        300 
GIGRDNIISI ATTADNKVDV EAMRLAAKAL ASKNIKVMAV VGVAGTTETG NIDPLTELAA 

       310        320        330        340        350        360 
LAQELDCHFH VDAAWGGASL LSKKYRHLLK GIELADSVTI DAHKQMYVPM GAGMVLFKDP 

       370        380        390        400        410        420 
ELANAIVHHA EYILRVGSKD LGSQTLEGSR PGMAMIVHAC LQIIGLEGYE ILINNSLEKA 

       430        440        450        460        470        480 
RYFSELIKKS PDFELITEPE LCILTYRYVP STVQLAMSDA CQRQDWHALA QFNECLDGLT 

       490        500        510        520        530        540 
QFIQKHQREQ GKSFVSRTRI QPARYNRQHT TVFRVVLANP LTGLEILQGV LAEQQEIAAL 

       550 
DNEFLPQLLA LASA 

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References

[1]"Complete sequence of Shewanella denitrificans OS217."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS217 / ATCC BAA-1090 / DSM 15013.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000302 Genomic DNA. Translation: ABE55714.1.
RefSeqYP_563437.1. NC_007954.1.

3D structure databases

ProteinModelPortalQ12LG2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING318161.Sden_2434.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE55714; ABE55714; Sden_2434.
GeneID4018933.
KEGGsdn:Sden_2434.
PATRIC23490817. VBISheDen79529_2563.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAGMMHNLV.
OrthoDBEOG6MSRZP.

Enzyme and pathway databases

BioCycSDEN318161:GHKQ-2517-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ12LG2_SHEDO
AccessionPrimary (citable) accession number: Q12LG2
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)