Q12IH5 (Q12IH5_SHEDO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA helicase RecG EMBL ABE56751.1

Gene names

Ordered Locus Names:

Sden_3476

Organism

Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) [Complete proteome] [HAMAP] EMBL ABE56751.1

Taxonomic identifier

318161 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella denitrificans

Protein attributes

Sequence length	691 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Molecular function	Helicase RuleBase RU000452 EMBL ABE56751.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent DNA helicase activity Inferred from electronic annotation. Source: InterPro nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q12IH5 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 4CC5A794D46BDED8	FASTA	691	76,296
	10 20 30 40 50 60 MKQLDITPVT ELKGVAKKMA ERLAKLGIQT VQDLLFHLPL RYEDRTQVYP IASLPPGSYG 70 80 90 100 110 120 TIEAHIHSSQ ILQGRRRMLV CQVRDNTGSL TLKFFNFTMA QRNSMQNGAL IRAYGEIRRG 130 140 150 160 170 180 SHQAEIVHPD YKIIDSDESF TPSETLSPIY PTTEGLKQAS WLKLTEQALV MLAQGGLVER 190 200 210 220 230 240 LPEQLRPNNL SLPQALQILH RPPNHVSQEA LEQGQHPAQQ RLIQEELLAH NLSMLKLRQR 250 260 270 280 290 300 SNQDSAMPMA ASGRLLNPFL ASLPFSPTGA QQRVGIDIST DLEKPQPMMR LVQGDVGSGK 310 320 330 340 350 360 TLVAALAALQ AIENGYQVAM MAPTELLAEQ HSANFSAWFE PLGIKVGWLA GKLKGKARAQ 370 380 390 400 410 420 SLEDIASGAA QMVVGTHALF QQNVAFNKLA LIIIDEQHRF GVHQRLELRE KGVSQGFHPH 430 440 450 460 470 480 QLIMTATPIP RTLAMTAYAD LDTSVIDELP PGRTPVTTVA IPDTRREQVI ARVQQAAKTD 490 500 510 520 530 540 KRQTYWVCTL IDESEVLECQ AAEDTAAELA IALPELKVGL VHGRMKSADK QAVMAQFKMG 550 560 570 580 590 600 ELDLLVATTV IEVGVDVPNA SLMVIENPER LGLAQLHQLR GRVGRGAIAS HCVLLYKAPL 610 620 630 640 650 660 SYTATKRLGV LRDSNDGFVI AQKDLEIRGP GEVLGTKQTG LAELKIADLV RDQYLIPHIQ 670 680 690 KLAVHMMQQA PEQVDGIITR WLGHRQQYVQ A

References

[1]

"Complete sequence of Shewanella denitrificans OS217." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OS217 / ATCC BAA-1090 / DSM 15013.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000302 Genomic DNA. Translation: ABE56751.1.
RefSeq	YP_564474.1. NC_007954.1.
3D structure databases
ProteinModelPortal	Q12IH5.
ModBase	Search...
Protein-protein interaction databases
STRING	318161.Sden_3476.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE56751; ABE56751; Sden_3476.
GeneID	4020030.
KEGG	sdn:Sden_3476.
PATRIC	23493060. VBISheDen79529_3648.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1200.
HOGENOM	HOG000036617.
KO	K03655.
OMA	DRTRITP.
ProtClustDB	PRK10917.
Enzyme and pathway databases
BioCyc	SDEN318161:GHKQ-3603-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR004609. ATP-dep_DNA_helicase_RecG. IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR012340. NA-bd_OB-fold. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Pfam	PF00270. DEAD. 1 hit. PF00271. Helicase_C. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
SMART	SM00487. DEXDc. 1 hit. SM00490. HELICc. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00643. recG. 1 hit.
PROSITE	PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q12IH5_SHEDO

Accession

Primary (citable) accession number: Q12IH5

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)