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Q12HD2 (Q12HD2_POLSJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.39 EMBL ABE42060.1
Gene names
Ordered Locus Names:Bpro_0093 EMBL ABE42060.1
OrganismPolaromonas sp. (strain JS666 / ATCC BAA-500) [Complete proteome] [HAMAP] EMBL ABE42060.1
Taxonomic identifier296591 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas

Protein attributes

Sequence length413 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ABE42060.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q12HD2 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 6129481E62DAE443

FASTA41344,240
        10         20         30         40         50         60 
MSERIHATYW LETGDDPRRA AEVIAGEQSS GTFITLPNET PALKARSGAR IERLEVLEQV 

        70         80         90        100        110        120 
GQPSLPVATP AKVYTRCTLE LSWPIENLGP SLPNLMSTIA GNLFELRQVS GLRVLDLKLP 

       130        140        150        160        170        180 
ASFAAAYPGP AFGIAGTRRL SGVAQGPLIG TIIKPSVGLD PAQTAEQVRQ LIDGGIDFIK 

       190        200        210        220        230        240 
DDELQADGPH CPFDERVRAV MQVVNDAAQR DGRKVMVAFN LTGDLDQMRR RHDLVQSLGG 

       250        260        270        280        290        300 
TCVMASLNSI GLVGLLELRR HASLPIHAHR CGWGYLSRSP ALGWDFAPWH QIWRLAGADH 

       310        320        330        340        350        360 
LHVNGLANKF SESDASVIAA ARAVLRPLFA HQPMPAMPVF SSGQTGLQAP GTYAALGSAD 

       370        380        390        400        410 
LIHAAGGGIF GHPGGIASGV SAFRQAWEAA MAGTPLHEHA KTHAELRSAL EFW 

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References

[1]"Complete sequence of chromosome of Polaromonas sp. JS666."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JS666 / ATCC BAA-500.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000316 Genomic DNA. Translation: ABE42060.1.
RefSeqYP_546958.1. NC_007948.1.

3D structure databases

ProteinModelPortalQ12HD2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING296591.Bpro_0093.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE42060; ABE42060; Bpro_0093.
GeneID4012254.
KEGGpol:Bpro_0093.
PATRIC22953222. VBIPolSp102244_0100.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1850.
HOGENOMHOG000230831.
KOK01601.
OMARYTRAIL.
OrthoDBEOG62K1SK.

Enzyme and pathway databases

BioCycPSP296591:GHI4-814-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ12HD2_POLSJ
AccessionPrimary (citable) accession number: Q12HD2
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)