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Q12GY8 (Q12GY8_POLSJ) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bpro_0239 EMBL ABE42204.1
OrganismPolaromonas sp. (strain JS666 / ATCC BAA-500) [Complete proteome] [HAMAP] EMBL ABE42204.1
Taxonomic identifier296591 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas

Protein attributes

Sequence length248 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential EMBL ABE42204.1
Chain30 – 248219 Potential EMBL ABE42204.1
PRO_5000116452

Regions

Nucleotide binding9 – 146NADP PDB 4IQG
Nucleotide binding34 – 363NADP PDB 4IQG
Nucleotide binding60 – 612NADP PDB 4IQG
Nucleotide binding187 – 1959NADP PDB 4IQG

Sites

Binding site871NADP; via carbonyl oxygen PDB 4IQG
Binding site1571NADP PDB 4IQG
Binding site1611NADP PDB 4IQG

Sequences

Sequence LengthMass (Da)Tools
Q12GY8 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 95FF3E42B76C3696

FASTA24825,750
        10         20         30         40         50         60 
MSKVVLITGG SRGIGAASAL LAARQGYAVA VNYASNSAAA DEVVRQIREA GGQALAVQAD 

        70         80         90        100        110        120 
VAKEREVLAM FETVDAQLGR LSALVNNAGV VDQTTRVDGI TLERLQRMFE INVFGSFLCA 

       130        140        150        160        170        180 
REAVKRMSTR YGGSGGSIVN VSSAAARLGS PGQYVDYAAA KGAIDTFTLG LAKEVATEGI 

       190        200        210        220        230        240 
RVNAVRPGII ETDIHASGGL PNRARDVAPQ VPMQRAGTAR EVAEAIVWLL GDQASYTTGA 


LLDVTGGR 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Polaromonas sp. JS666."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JS666 / ATCC BAA-500.
[2]"Crystal structure of oxidoreductase from Polaromonas sp. in NADP bound form."
New York Structural Genomics Research Consortium (NYSGRC)
Niedzialkowska E., Majorek K.A., Porebski P.J., Al Obaidi N., Hammonds J., Hillerich B., Seidel R., Bonanno J.B., Almo S.C., Minor W.
Submitted (JAN-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) OF 2-248 IN COMPLEX WITH NADP.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000316 Genomic DNA. Translation: ABE42204.1.
RefSeqYP_547102.1. NC_007948.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4IQGX-ray1.85A/B/C/D2-248[»]
ProteinModelPortalQ12GY8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING296591.Bpro_0239.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE42204; ABE42204; Bpro_0239.
GeneID4011917.
KEGGpol:Bpro_0239.
PATRIC22953524. VBIPolSp102244_0251.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1028.
OMARRMSTRY.
OrthoDBEOG6N3CR8.

Enzyme and pathway databases

BioCycPSP296591:GHI4-960-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PfamPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ12GY8_POLSJ
AccessionPrimary (citable) accession number: Q12GY8
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: June 11, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)