Short-chain dehydrogenase/reductase SDR precursor - Polaromonas sp. (strain JS666 / ATCC BAA-500)

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Q12GY8 (Q12GY8_POLSJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 53. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Short-chain dehydrogenase/reductase SDR EMBL ABE42204.1

Gene names

Ordered Locus Names:

Bpro_0239 EMBL ABE42204.1

Organism

Polaromonas sp. (strain JS666 / ATCC BAA-500) [Complete proteome] [HAMAP] EMBL ABE42204.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Polaromonas

Protein attributes

Sequence length	248 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the short-chain dehydrogenases/reductases (SDR) family. RuleBase RU000363

Ontologies

Keywords
Domain	Signal EMBL ABE42204.1
Technical term	3D-structure PDB 4IQG Complete proteome
Gene Ontology (GO)
Biological_process	oxidation-reduction process Inferred from electronic annotation. Source: GOC
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

29

Potential EMBL ABE42204.1

Chain

219

Potential

PRO_5000116452

Sequences

Sequence

Length

Mass (Da)

Tools

Q12GY8 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 95FF3E42B76C3696
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248

25,750

        10         20         30         40         50         60 
MSKVVLITGG SRGIGAASAL LAARQGYAVA VNYASNSAAA DEVVRQIREA GGQALAVQAD 

        70         80         90        100        110        120 
VAKEREVLAM FETVDAQLGR LSALVNNAGV VDQTTRVDGI TLERLQRMFE INVFGSFLCA 

       130        140        150        160        170        180 
REAVKRMSTR YGGSGGSIVN VSSAAARLGS PGQYVDYAAA KGAIDTFTLG LAKEVATEGI 

       190        200        210        220        230        240 
RVNAVRPGII ETDIHASGGL PNRARDVAPQ VPMQRAGTAR EVAEAIVWLL GDQASYTTGA 


LLDVTGGR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Polaromonas sp. JS666." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Gilna P., Schmutz J. Richardson P. Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JS666 / ATCC BAA-500.
[2]	"Crystal structure of oxidoreductase from Polaromonas sp. in NADP bound form." New York Structural Genomics Research Consortium (NYSGRC) Niedzialkowska E., Majorek K.A., Porebski P.J., Al Obaidi N., Hammonds J., Hillerich B., Seidel R., Bonanno J.B., Almo S.C., Minor W. Submitted (JAN-2013) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) OF 2-248.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000316 Genomic DNA. Translation: ABE42204.1.

RefSeq

YP_547102.1. NC_007948.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4IQG	X-ray	1.85	A/B/C/D	2-248	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

296591.Bpro_0239.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABE42204; ABE42204; Bpro_0239.

GeneID

KEGG

PATRIC

22953524. VBIPolSp102244_0251.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

PSP296591:GHI4-960-MONOMER.

Family and domain databases

Gene3D

3.40.50.720. 1 hit.

InterPro

IPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]

Pfam

PF00106. adh_short. 1 hit.
[Graphical view]

PRINTS

PR00081. GDHRDH.
PR00080. SDRFAMILY.

PROSITE

PS00061. ADH_SHORT. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q12GY8_POLSJ

Accession

Primary (citable) accession number: Q12GY8

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info