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Q12GX1

- RL3_POLSJ

UniProt

Q12GX1 - RL3_POLSJ

Protein

50S ribosomal protein L3

Gene

rplC

Organism
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciPSP296591:GHI4-977-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L3UniRule annotation
    Gene namesi
    Name:rplCUniRule annotation
    Ordered Locus Names:Bpro_0256
    OrganismiPolaromonas sp. (strain JS666 / ATCC BAA-500)
    Taxonomic identifieri296591 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
    ProteomesiUP000001983: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 22722750S ribosomal protein L3PRO_1000052105Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei158 – 1581N5-methylglutamineUniRule annotation

    Post-translational modificationi

    Methylated by PrmB.UniRule annotation

    Keywords - PTMi

    Methylation

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.UniRule annotation

    Protein-protein interaction databases

    STRINGi296591.Bpro_0256.

    Structurei

    3D structure databases

    ProteinModelPortaliQ12GX1.
    SMRiQ12GX1. Positions 7-217.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L3P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0087.
    HOGENOMiHOG000100368.
    KOiK02906.
    OMAiFMEDGKQ.
    OrthoDBiEOG6WDSMH.

    Family and domain databases

    HAMAPiMF_01325_B. Ribosomal_L3_B.
    InterProiIPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PANTHERiPTHR11229. PTHR11229. 1 hit.
    PfamiPF00297. Ribosomal_L3. 1 hit.
    [Graphical view]
    SUPFAMiSSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR03625. L3_bact. 1 hit.
    PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q12GX1-1 [UniParc]FASTAAdd to Basket

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    MSLSNSLGLL GRKVGMMRLF TDDGDTVPVT VVDVSNNRVT QVKTEANDGY    50
    DALQVAFGAR KASRVTKPAA GHLAKAGVEA GEILKEFRVT ADVAGKYAAG 100
    TVVPAADVFA VGQLVDVQGT SIGKGYAGTI KRHNMSSQRA SHGNSRSHNV 150
    PGSIGMAQDP GRVFPGKRMT GHLGDVTVTT QNLNIVRIDE ARQLLMIRGA 200
    VPGSKGGFVT VRAAIKAKPT TAAKGAN 227
    Length:227
    Mass (Da):23,593
    Last modified:August 22, 2006 - v1
    Checksum:iDF94AEE75517A87C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000316 Genomic DNA. Translation: ABE42221.1.
    RefSeqiWP_011481229.1. NC_007948.1.
    YP_547119.1. NC_007948.1.

    Genome annotation databases

    EnsemblBacteriaiABE42221; ABE42221; Bpro_0256.
    GeneIDi4011702.
    KEGGipol:Bpro_0256.
    PATRICi22953564. VBIPolSp102244_0271.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000316 Genomic DNA. Translation: ABE42221.1 .
    RefSeqi WP_011481229.1. NC_007948.1.
    YP_547119.1. NC_007948.1.

    3D structure databases

    ProteinModelPortali Q12GX1.
    SMRi Q12GX1. Positions 7-217.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 296591.Bpro_0256.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE42221 ; ABE42221 ; Bpro_0256 .
    GeneIDi 4011702.
    KEGGi pol:Bpro_0256.
    PATRICi 22953564. VBIPolSp102244_0271.

    Phylogenomic databases

    eggNOGi COG0087.
    HOGENOMi HOG000100368.
    KOi K02906.
    OMAi FMEDGKQ.
    OrthoDBi EOG6WDSMH.

    Enzyme and pathway databases

    BioCyci PSP296591:GHI4-977-MONOMER.

    Family and domain databases

    HAMAPi MF_01325_B. Ribosomal_L3_B.
    InterProi IPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    PANTHERi PTHR11229. PTHR11229. 1 hit.
    Pfami PF00297. Ribosomal_L3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR03625. L3_bact. 1 hit.
    PROSITEi PS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JS666 / ATCC BAA-500.

    Entry informationi

    Entry nameiRL3_POLSJ
    AccessioniPrimary (citable) accession number: Q12GX1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3