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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bpro_2416

Organism
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSP296591:GHI4-3137-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bpro_2416Imported
OrganismiPolaromonas sp. (strain JS666 / ATCC BAA-500)Imported
Taxonomic identifieri296591 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
ProteomesiUP000001983: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4141 PotentialImportedAdd
BLAST
Chaini42 – 306265 PotentialImportedPRO_5000116871Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi296591.Bpro_2416.

Structurei

3D structure databases

ProteinModelPortaliQ12AV7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q12AV7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPAHTPSANT RLTIAPFRAQ TLALLLALAG LLTPALPLLA AETSPPLMLA
60 70 80 90 100
KVYHVGVSLA DYWVSEKYDG VRGYWDGEKL LTRGGERIVA PAWFTADWPK
110 120 130 140 150
VAMDGELWAG RGQFAKAVST VRQQTPDDAA WRAMRFMVFD LPAQGGPFTE
160 170 180 190 200
RIPALNGVVS RIDQPWVQAV AQFKVANHRA LQNLLATTEK HAGEGLMLHR
210 220 230 240 250
GASLYMGQRT DDLLKVKTHE DTEARVVAHI PGKGKYVGVL GALLVEMPGV
260 270 280 290 300
DGKPGRRFKL GSGFNDEQRQ NPPVLGSTVT YRFRGLNGSG VPRFASFMRV

REDQPV
Length:306
Mass (Da):33,492
Last modified:August 22, 2006 - v1
Checksum:i9B3FC4F38E913703
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000316 Genomic DNA. Translation: ABE44335.1.
RefSeqiWP_011483333.1. NC_007948.1.
YP_549233.1. NC_007948.1.

Genome annotation databases

EnsemblBacteriaiABE44335; ABE44335; Bpro_2416.
GeneIDi4014915.
KEGGipol:Bpro_2416.
PATRICi22957966. VBIPolSp102244_2445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000316 Genomic DNA. Translation: ABE44335.1.
RefSeqiWP_011483333.1. NC_007948.1.
YP_549233.1. NC_007948.1.

3D structure databases

ProteinModelPortaliQ12AV7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi296591.Bpro_2416.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE44335; ABE44335; Bpro_2416.
GeneIDi4014915.
KEGGipol:Bpro_2416.
PATRICi22957966. VBIPolSp102244_2445.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciPSP296591:GHI4-3137-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JS666 / ATCC BAA-500Imported.

Entry informationi

Entry nameiQ12AV7_POLSJ
AccessioniPrimary (citable) accession number: Q12AV7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: January 7, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.