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Q12AV7

- Q12AV7_POLSJ

UniProt

Q12AV7 - Q12AV7_POLSJ

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bpro_2416

Organism
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSP296591:GHI4-3137-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bpro_2416Imported
OrganismiPolaromonas sp. (strain JS666 / ATCC BAA-500)Imported
Taxonomic identifieri296591 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
ProteomesiUP000001983: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4141 PotentialImportedAdd
BLAST
Chaini42 – 306265 PotentialImportedPRO_5000116871Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi296591.Bpro_2416.

Structurei

3D structure databases

ProteinModelPortaliQ12AV7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiSLVTYRY.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q12AV7-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPAHTPSANT RLTIAPFRAQ TLALLLALAG LLTPALPLLA AETSPPLMLA
60 70 80 90 100
KVYHVGVSLA DYWVSEKYDG VRGYWDGEKL LTRGGERIVA PAWFTADWPK
110 120 130 140 150
VAMDGELWAG RGQFAKAVST VRQQTPDDAA WRAMRFMVFD LPAQGGPFTE
160 170 180 190 200
RIPALNGVVS RIDQPWVQAV AQFKVANHRA LQNLLATTEK HAGEGLMLHR
210 220 230 240 250
GASLYMGQRT DDLLKVKTHE DTEARVVAHI PGKGKYVGVL GALLVEMPGV
260 270 280 290 300
DGKPGRRFKL GSGFNDEQRQ NPPVLGSTVT YRFRGLNGSG VPRFASFMRV

REDQPV
Length:306
Mass (Da):33,492
Last modified:August 22, 2006 - v1
Checksum:i9B3FC4F38E913703
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000316 Genomic DNA. Translation: ABE44335.1.
RefSeqiWP_011483333.1. NC_007948.1.
YP_549233.1. NC_007948.1.

Genome annotation databases

EnsemblBacteriaiABE44335; ABE44335; Bpro_2416.
GeneIDi4014915.
KEGGipol:Bpro_2416.
PATRICi22957966. VBIPolSp102244_2445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000316 Genomic DNA. Translation: ABE44335.1 .
RefSeqi WP_011483333.1. NC_007948.1.
YP_549233.1. NC_007948.1.

3D structure databases

ProteinModelPortali Q12AV7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 296591.Bpro_2416.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE44335 ; ABE44335 ; Bpro_2416 .
GeneIDi 4014915.
KEGGi pol:Bpro_2416.
PATRICi 22957966. VBIPolSp102244_2445.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi SLVTYRY.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci PSP296591:GHI4-3137-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JS666 / ATCC BAA-500Imported.

Entry informationi

Entry nameiQ12AV7_POLSJ
AccessioniPrimary (citable) accession number: Q12AV7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: October 29, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3