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Q12AV7

- Q12AV7_POLSJ

UniProt

Q12AV7 - Q12AV7_POLSJ

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bpro_2416

Organism
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSP296591:GHI4-3137-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Bpro_2416Imported
    OrganismiPolaromonas sp. (strain JS666 / ATCC BAA-500)Imported
    Taxonomic identifieri296591 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
    ProteomesiUP000001983: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 4141 PotentialImportedAdd
    BLAST
    Chaini42 – 306265 PotentialImportedPRO_5000116871Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi296591.Bpro_2416.

    Structurei

    3D structure databases

    ProteinModelPortaliQ12AV7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiSLVTYRY.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q12AV7-1 [UniParc]FASTAAdd to Basket

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    MPAHTPSANT RLTIAPFRAQ TLALLLALAG LLTPALPLLA AETSPPLMLA    50
    KVYHVGVSLA DYWVSEKYDG VRGYWDGEKL LTRGGERIVA PAWFTADWPK 100
    VAMDGELWAG RGQFAKAVST VRQQTPDDAA WRAMRFMVFD LPAQGGPFTE 150
    RIPALNGVVS RIDQPWVQAV AQFKVANHRA LQNLLATTEK HAGEGLMLHR 200
    GASLYMGQRT DDLLKVKTHE DTEARVVAHI PGKGKYVGVL GALLVEMPGV 250
    DGKPGRRFKL GSGFNDEQRQ NPPVLGSTVT YRFRGLNGSG VPRFASFMRV 300
    REDQPV 306
    Length:306
    Mass (Da):33,492
    Last modified:August 22, 2006 - v1
    Checksum:i9B3FC4F38E913703
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000316 Genomic DNA. Translation: ABE44335.1.
    RefSeqiWP_011483333.1. NC_007948.1.
    YP_549233.1. NC_007948.1.

    Genome annotation databases

    EnsemblBacteriaiABE44335; ABE44335; Bpro_2416.
    GeneIDi4014915.
    KEGGipol:Bpro_2416.
    PATRICi22957966. VBIPolSp102244_2445.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000316 Genomic DNA. Translation: ABE44335.1 .
    RefSeqi WP_011483333.1. NC_007948.1.
    YP_549233.1. NC_007948.1.

    3D structure databases

    ProteinModelPortali Q12AV7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 296591.Bpro_2416.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE44335 ; ABE44335 ; Bpro_2416 .
    GeneIDi 4014915.
    KEGGi pol:Bpro_2416.
    PATRICi 22957966. VBIPolSp102244_2445.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi SLVTYRY.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci PSP296591:GHI4-3137-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JS666 / ATCC BAA-500Imported.

    Entry informationi

    Entry nameiQ12AV7_POLSJ
    AccessioniPrimary (citable) accession number: Q12AV7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 22, 2006
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3