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Q12AV7 (Q12AV7_POLSJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bpro_2416 EMBL ABE44335.1
OrganismPolaromonas sp. (strain JS666 / ATCC BAA-500) [Complete proteome] [HAMAP] EMBL ABE44335.1
Taxonomic identifier296591 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas

Protein attributes

Sequence length306 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABE44335.1
   Molecular functionLigase EMBL ABE44335.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4141 Potential EMBL ABE44335.1
Chain42 – 306265 Potential EMBL ABE44335.1
PRO_5000116871

Sequences

Sequence LengthMass (Da)Tools
Q12AV7 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 9B3FC4F38E913703

FASTA30633,492
        10         20         30         40         50         60 
MPAHTPSANT RLTIAPFRAQ TLALLLALAG LLTPALPLLA AETSPPLMLA KVYHVGVSLA 

        70         80         90        100        110        120 
DYWVSEKYDG VRGYWDGEKL LTRGGERIVA PAWFTADWPK VAMDGELWAG RGQFAKAVST 

       130        140        150        160        170        180 
VRQQTPDDAA WRAMRFMVFD LPAQGGPFTE RIPALNGVVS RIDQPWVQAV AQFKVANHRA 

       190        200        210        220        230        240 
LQNLLATTEK HAGEGLMLHR GASLYMGQRT DDLLKVKTHE DTEARVVAHI PGKGKYVGVL 

       250        260        270        280        290        300 
GALLVEMPGV DGKPGRRFKL GSGFNDEQRQ NPPVLGSTVT YRFRGLNGSG VPRFASFMRV 


REDQPV 

« Hide

References

[1]"Complete sequence of chromosome of Polaromonas sp. JS666."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JS666 / ATCC BAA-500.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000316 Genomic DNA. Translation: ABE44335.1.
RefSeqYP_549233.1. NC_007948.1.

3D structure databases

ProteinModelPortalQ12AV7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING296591.Bpro_2416.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE44335; ABE44335; Bpro_2416.
GeneID4014915.
KEGGpol:Bpro_2416.
PATRIC22957966. VBIPolSp102244_2445.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Enzyme and pathway databases

BioCycPSP296591:GHI4-3137-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ12AV7_POLSJ
AccessionPrimary (citable) accession number: Q12AV7
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: April 16, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)