Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

Gene

SMARCB1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Core component of the BAF (hSWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is able to create a stable, altered form of chromatin that constrains fewer negative supercoils than normal. This change in supercoiling would be due to the conversion of up to one-half of the nucleosomes on polynucleosomal arrays into asymmetric structures, termed altosomes, each composed of 2 histones octamers. Stimulates in vitro the remodeling activity of SMARCA4/BRG1/BAF190A. Involved in activation of CSF1 promoter. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Plays a key role in cell-cycle control and causes cell cycle arrest in G0/G1.By similarity6 Publications

GO - Molecular functioni

  • p53 binding Source: BHF-UCL
  • Tat protein binding Source: BHF-UCL
  • transcription coactivator activity Source: BHF-UCL

GO - Biological processi

  • ATP-dependent chromatin remodeling Source: UniProtKB
  • blastocyst hatching Source: Ensembl
  • cell differentiation Source: GO_Central
  • chromatin organization Source: Reactome
  • chromatin remodeling Source: BHF-UCL
  • DNA integration Source: ProtInc
  • DNA repair Source: GO_Central
  • mitotic cell cycle phase transition Source: GO_Central
  • negative regulation of cell proliferation Source: GO_Central
  • nervous system development Source: UniProtKB-KW
  • nucleosome disassembly Source: BHF-UCL
  • positive regulation by host of viral transcription Source: BHF-UCL
  • positive regulation of sequence-specific DNA binding transcription factor activity Source: BHF-UCL
  • positive regulation of transcription from RNA polymerase II promoter Source: BHF-UCL
  • regulation of transcription from RNA polymerase II promoter Source: BHF-UCL
  • single stranded viral RNA replication via double stranded DNA intermediate Source: MGI
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator, Chromatin regulator

Keywords - Biological processi

Cell cycle, Host-virus interaction, Neurogenesis, Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiREACT_264545. RMTs methylate histone arginines.

Names & Taxonomyi

Protein namesi
Recommended name:
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Alternative name(s):
BRG1-associated factor 47
Short name:
BAF47
Integrase interactor 1 protein
SNF5 homolog
Short name:
hSNF5
Gene namesi
Name:SMARCB1
Synonyms:BAF47, INI1, SNF5L1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componentsi: Chromosome 22, Unplaced

Organism-specific databases

HGNCiHGNC:11103. SMARCB1.

Subcellular locationi

GO - Cellular componenti

  • nBAF complex Source: UniProtKB
  • npBAF complex Source: UniProtKB
  • nuclear chromatin Source: UniProtKB
  • nucleolus Source: HPA
  • nucleoplasm Source: HPA
  • nucleus Source: HPA
  • protein complex Source: UniProtKB
  • SWI/SNF complex Source: UniProtKB
  • XY body Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Involvement in diseasei

Rhabdoid tumor predisposition syndrome 1 (RTPS1)

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA familial cancer syndrome predisposing to renal or extrarenal malignant rhabdoid tumors and to a variety of tumors of the central nervous system, including choroid plexus carcinoma, medulloblastoma, and central primitive neuroectodermal tumors. Rhabdoid tumors are the most aggressive and lethal malignancies occurring in early childhood.

See also OMIM:609322
Schwannomatosis 1 (SWNTS1)2 Publications

Disease susceptibility is associated with variations affecting the gene represented in this entry.

Disease descriptionA cancer syndrome in which patients develop multiple non-vestibular schwannomas, benign neoplasms that arise from Schwann cells of the cranial, peripheral, and autonomic nerves.

See also OMIM:162091
Mental retardation, autosomal dominant 15 (MRD15)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA disease characterized by multiple congenital anomalies and mental retardation. Mental retardation is defined by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRD15 patients manifest developmental delay, hypotonia, absent or hypoplastic fifth finger or toenails, a coarse facial appearance, sparse scalp hair, thick eyebrows, and long eyelashes. Additional variable features include microcephaly, small cerebellum, seizures, hearing loss, abnormal delayed dentition, hirsutism.

See also OMIM:614608
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti364 – 3641Missing in MRD15. 1 Publication
VAR_068178
Natural varianti377 – 3771R → H in MRD15. 1 Publication
VAR_068179

Keywords - Diseasei

Disease mutation, Mental retardation, Tumor suppressor

Organism-specific databases

MIMi162091. phenotype.
609322. phenotype.
614608. phenotype.
Orphaneti99966. Atypical teratoid rhabdoid tumor.
1465. Coffin-Siris syndrome.
263662. Familial multiple meningioma.
231108. Familial rhabdoid tumor.
93921. Neurofibromatosis type 3.
PharmGKBiPA35953.

Polymorphism and mutation databases

BioMutaiSMARCB1.
DMDMi51338799.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 385385SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1PRO_0000205948Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei129 – 1291Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ12824.
PaxDbiQ12824.
PRIDEiQ12824.

PTM databases

PhosphoSiteiQ12824.

Expressioni

Gene expression databases

BgeeiQ12824.
CleanExiHS_SMARCB1.
ExpressionAtlasiQ12824. baseline and differential.
GenevestigatoriQ12824.

Organism-specific databases

HPAiCAB009196.
HPA018248.
HPA019127.

Interactioni

Subunit structurei

Component of the BAF (hSWI/SNF) complex, which includes at least actin (ACTB), ARID1A, ARID1B/BAF250, SMARCA2, SMARCA4/BRG1/BAF190A, ACTL6A/BAF53, ACTL6B/BAF53B, SMARCE1/BAF57 SMARCC1/BAF155, SMARCC2/BAF170, SMARCB1/SNF5/INI1, and one or more of SMARCD1/BAF60A, SMARCD2/BAF60B, or SMARCD3/BAF60C. In muscle cells, the BAF complex also contains DPF3. Binds to double-stranded DNA. Interacts with MYK and MAEL. Interacts with Component of neural progenitors-specific chromatin remodeling complex (npBAF complex) composed of at least, ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A and actin. Component of neuron-specific chromatin remodeling complex (nBAF complex) composed of at least, ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B and actin (By similarity). Binds tightly to the human immunodeficiency virus-type 1 (HIV-1) integrase in vitro and stimulates its DNA-joining activity. Interacts with human papillomavirus 18 E1 protein to stimulate its viral replication. Interacts with Epstein-Barr virus protein EBNA-2. Interacts with CEBPB (when not methylated) (PubMed:20111005). Interacts with PIH1D1 (PubMed:22368283).By similarity2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
P043263EBI-358419,EBI-7333987From a different organism.
ARID2Q68CP93EBI-358419,EBI-637818
E1P067895EBI-7015645,EBI-7015660From a different organism.
gag-polP045853EBI-358419,EBI-9872653From a different organism.
SMARCA4P5153222EBI-358419,EBI-302489
Smarca4Q8K1P72EBI-358419,EBI-689301From a different organism.

Protein-protein interaction databases

BioGridi112482. 112 interactions.
DIPiDIP-27550N.
IntActiQ12824. 35 interactions.
MINTiMINT-94943.
STRINGi9606.ENSP00000263121.

Structurei

3D structure databases

ProteinModelPortaliQ12824.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati186 – 245601Add
BLAST
Repeati259 – 319612Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni106 – 18378DNA-bindingSequence AnalysisAdd
BLAST
Regioni183 – 24361HIV-1 integrase-bindingAdd
BLAST
Regioni186 – 3191342 X approximate tandem repeatsAdd
BLAST
Regioni186 – 24560MYC-bindingAdd
BLAST
Regioni304 – 31815Interaction with PPP1R15AAdd
BLAST

Sequence similaritiesi

Belongs to the SNF5 family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG291299.
GeneTreeiENSGT00440000038585.
HOGENOMiHOG000015760.
HOVERGENiHBG011709.
InParanoidiQ12824.
KOiK11648.
PhylomeDBiQ12824.
TreeFamiTF105993.

Family and domain databases

InterProiIPR006939. SNF5.
IPR017393. SWI_SNF_chromatin_remodel_cplx.
[Graphical view]
PANTHERiPTHR10019. PTHR10019. 1 hit.
PfamiPF04855. SNF5. 1 hit.
[Graphical view]
PIRSFiPIRSF038126. SWI_SNF. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform A (identifier: Q12824-1) [UniParc]FASTAAdd to basket

Also known as: INI1A

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MMMMALSKTF GQKPVKFQLE DDGEFYMIGS EVGNYLRMFR GSLYKRYPSL
60 70 80 90 100
WRRLATVEER KKIVASSHGK KTKPNTKDHG YTTLATSVTL LKASEVEEIL
110 120 130 140 150
DGNDEKYKAV SISTEPPTYL REQKAKRNSQ WVPTLPNSSH HLDAVPCSTT
160 170 180 190 200
INRNRMGRDK KRTFPLCFDD HDPAVIHENA SQPEVLVPIR LDMEIDGQKL
210 220 230 240 250
RDAFTWNMNE KLMTPEMFSE ILCDDLDLNP LTFVPAIASA IRQQIESYPT
260 270 280 290 300
DSILEDQSDQ RVIIKLNIHV GNISLVDQFE WDMSEKENSP EKFALKLCSE
310 320 330 340 350
LGLGGEFVTT IAYSIRGQLS WHQKTYAFSE NPLPTVEIAI RNTGDADQWC
360 370 380
PLLETLTDAE MEKKIRDQDR NTRRMRRLAN TAPAW
Length:385
Mass (Da):44,141
Last modified:August 16, 2004 - v2
Checksum:iB7BCA26875BD943D
GO
Isoform B (identifier: Q12824-2) [UniParc]FASTAAdd to basket

Also known as: INI1B

The sequence of this isoform differs from the canonical sequence as follows:
     69-77: Missing.

Show »
Length:376
Mass (Da):43,158
Checksum:i6C7233EAFBC389A9
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti136 – 1361P → S (PubMed:7801128).Curated
Sequence conflicti136 – 1361P → S in CAA76639 (PubMed:9671307).Curated
Sequence conflicti378 – 3781L → E in CAA76639 (PubMed:9671307).Curated
Sequence conflicti382 – 3821A → G (PubMed:7801128).Curated
Sequence conflicti382 – 3821A → G in CAA76639 (PubMed:9671307).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti364 – 3641Missing in MRD15. 1 Publication
VAR_068178
Natural varianti377 – 3771R → H in MRD15. 1 Publication
VAR_068179

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei69 – 779Missing in isoform B. 4 PublicationsVSP_004399

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U04847 mRNA. Translation: AAA81905.1.
Y17118
, Y17119, Y17120, Y17121, Y17122, Y17123, Y17124, Y17125, Y17126 Genomic DNA. Translation: CAA76639.1. Sequence problems.
AJ011738 mRNA. Translation: CAA09759.1.
AJ011737 mRNA. Translation: CAA09758.1.
AB017523 mRNA. Translation: BAC77068.1.
CR456581 mRNA. Translation: CAG30467.1.
AK021419 mRNA. Translation: BAG51033.1.
DQ230988 Genomic DNA. Translation: ABB02184.1.
CH471095 Genomic DNA. Translation: EAW59606.1.
BC117114 mRNA. Translation: AAI17115.1.
BC143667 mRNA. Translation: AAI43668.1.
CCDSiCCDS13817.1. [Q12824-1]
CCDS46671.1. [Q12824-2]
PIRiS54705.
RefSeqiNP_001007469.1. NM_001007468.1. [Q12824-2]
NP_003064.2. NM_003073.3. [Q12824-1]
UniGeneiHs.534350.

Genome annotation databases

EnsembliENST00000263121; ENSP00000263121; ENSG00000099956. [Q12824-1]
ENST00000407422; ENSP00000383984; ENSG00000099956. [Q12824-2]
ENST00000618915; ENSP00000479330; ENSG00000275837. [Q12824-1]
ENST00000631333; ENSP00000486870; ENSG00000275837. [Q12824-2]
GeneIDi6598.
KEGGihsa:6598.
UCSCiuc002zya.3. human. [Q12824-1]
uc002zyc.3. human. [Q12824-2]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Web resourcesi

Atlas of Genetics and Cytogenetics in Oncology and Haematology
NIEHS-SNPs

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U04847 mRNA. Translation: AAA81905.1.
Y17118
, Y17119, Y17120, Y17121, Y17122, Y17123, Y17124, Y17125, Y17126 Genomic DNA. Translation: CAA76639.1. Sequence problems.
AJ011738 mRNA. Translation: CAA09759.1.
AJ011737 mRNA. Translation: CAA09758.1.
AB017523 mRNA. Translation: BAC77068.1.
CR456581 mRNA. Translation: CAG30467.1.
AK021419 mRNA. Translation: BAG51033.1.
DQ230988 Genomic DNA. Translation: ABB02184.1.
CH471095 Genomic DNA. Translation: EAW59606.1.
BC117114 mRNA. Translation: AAI17115.1.
BC143667 mRNA. Translation: AAI43668.1.
CCDSiCCDS13817.1. [Q12824-1]
CCDS46671.1. [Q12824-2]
PIRiS54705.
RefSeqiNP_001007469.1. NM_001007468.1. [Q12824-2]
NP_003064.2. NM_003073.3. [Q12824-1]
UniGeneiHs.534350.

3D structure databases

ProteinModelPortaliQ12824.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi112482. 112 interactions.
DIPiDIP-27550N.
IntActiQ12824. 35 interactions.
MINTiMINT-94943.
STRINGi9606.ENSP00000263121.

PTM databases

PhosphoSiteiQ12824.

Polymorphism and mutation databases

BioMutaiSMARCB1.
DMDMi51338799.

Proteomic databases

MaxQBiQ12824.
PaxDbiQ12824.
PRIDEiQ12824.

Protocols and materials databases

DNASUi6598.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000263121; ENSP00000263121; ENSG00000099956. [Q12824-1]
ENST00000407422; ENSP00000383984; ENSG00000099956. [Q12824-2]
ENST00000618915; ENSP00000479330; ENSG00000275837. [Q12824-1]
ENST00000631333; ENSP00000486870; ENSG00000275837. [Q12824-2]
GeneIDi6598.
KEGGihsa:6598.
UCSCiuc002zya.3. human. [Q12824-1]
uc002zyc.3. human. [Q12824-2]

Organism-specific databases

CTDi6598.
GeneCardsiGC22P024129.
GeneReviewsiSMARCB1.
HGNCiHGNC:11103. SMARCB1.
HPAiCAB009196.
HPA018248.
HPA019127.
MIMi162091. phenotype.
601607. gene.
609322. phenotype.
614608. phenotype.
neXtProtiNX_Q12824.
Orphaneti99966. Atypical teratoid rhabdoid tumor.
1465. Coffin-Siris syndrome.
263662. Familial multiple meningioma.
231108. Familial rhabdoid tumor.
93921. Neurofibromatosis type 3.
PharmGKBiPA35953.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG291299.
GeneTreeiENSGT00440000038585.
HOGENOMiHOG000015760.
HOVERGENiHBG011709.
InParanoidiQ12824.
KOiK11648.
PhylomeDBiQ12824.
TreeFamiTF105993.

Enzyme and pathway databases

ReactomeiREACT_264545. RMTs methylate histone arginines.

Miscellaneous databases

ChiTaRSiSMARCB1. human.
GeneWikiiSMARCB1.
GenomeRNAii6598.
NextBioi25665.
PROiQ12824.
SOURCEiSearch...

Gene expression databases

BgeeiQ12824.
CleanExiHS_SMARCB1.
ExpressionAtlasiQ12824. baseline and differential.
GenevestigatoriQ12824.

Family and domain databases

InterProiIPR006939. SNF5.
IPR017393. SWI_SNF_chromatin_remodel_cplx.
[Graphical view]
PANTHERiPTHR10019. PTHR10019. 1 hit.
PfamiPF04855. SNF5. 1 hit.
[Graphical view]
PIRSFiPIRSF038126. SWI_SNF. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Binding and stimulation of HIV-1 integrase by a human homolog of yeast transcription factor SNF5."
    Kalpana G.V., Marmon S., Wang W., Crabtree G.R., Goff S.P.
    Science 266:2002-2006(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A).
  2. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], INVOLVEMENT IN RDT.
  3. "The mouse ortholog of the human SMARCB1 gene encodes two splice forms."
    Bruder C.E., Dumanski J.P., Kedra D.
    Biochem. Biophys. Res. Commun. 257:886-890(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A AND B).
  4. "Human Ini1 27bp deletion form."
    Tozaki H., Yasuda J., Iwakura Y.
    Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B).
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A).
  6. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B).
    Tissue: Embryo.
  7. NIEHS SNPs program
    Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  8. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  9. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B).
    Tissue: Brain.
  10. "Purification and biochemical heterogeneity of the mammalian SWI-SNF complex."
    Wang W., Cote J., Xue Y., Zhou S., Khavari P.A., Biggar S.R., Muchardt C., Kalpana G.V., Goff S.P., Yaniv M., Workman J.L., Crabtree G.R.
    EMBO J. 15:5370-5382(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN BAF COMPLEX.
  11. "Epstein-Barr virus nuclear protein 2 (EBNA2) binds to a component of the human SNF-SWI complex, hSNF5/Ini1."
    Wu D.Y., Kalpana G.V., Goff S.P., Schubach W.H.
    J. Virol. 70:6020-6028(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH EPSTEIN-BARR VIRUS EBNA2.
  12. "Structure-function analysis of integrase interactor 1/hSNF5L1 reveals differential properties of two repeat motifs present in the highly conserved region."
    Morozov A., Yung E., Kalpana G.V.
    Proc. Natl. Acad. Sci. U.S.A. 95:1120-1125(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  13. "Leukemic HRX fusion proteins inhibit GADD34-induced apoptosis and associate with the GADD34 and hSNF5/INI1 proteins."
    Adler H.T., Chinery R., Wu D.Y., Kussick S.J., Payne J.M., Fornace A.J. Jr., Tkachuk D.C.
    Mol. Cell. Biol. 19:7050-7060(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH PPP1R15A.
  14. "c-MYC interacts with INI1/hSNF5 and requires the SWI/SNF complex for transactivation function."
    Cheng S.-W., Davies K.P., Yung E., Beltran R.J., Yu J., Kalpana G.V.
    Nat. Genet. 22:102-105(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH MYC.
  15. "Interaction of E1 and hSNF5 proteins stimulates replication of human papillomavirus DNA."
    Lee D., Sohn H., Kalpana G.V., Choe J.
    Nature 399:487-491(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH HUMAN PAPILLOMAVIRUS-18 E1 PROTEIN.
  16. "Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits."
    Phelan M.L., Sif S., Narlikar G.J., Kingston R.E.
    Mol. Cell 3:247-253(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  17. "Germ-line and acquired mutations of INI1 in atypical teratoid and rhabdoid tumors."
    Biegel J.A., Zhou J.-Y., Rorke L.B., Stenstrom C., Wainwright L.M., Fogelgren B.
    Cancer Res. 59:74-79(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISEASE.
  18. "The human SNF5/INI1 protein facilitates the function of the growth arrest and DNA damage-inducible protein (GADD34) and modulates GADD34-bound protein phosphatase-1 activity."
    Wu D.Y., Tkachuck D.C., Roberson R.S., Schubach W.H.
    J. Biol. Chem. 277:27706-27715(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH PPP1R15A.
  19. "A key role of the hSNF5/INI1 tumour suppressor in the control of the G1-S transition of the cell cycle."
    Versteege I., Medjkane S., Rouillard D., Delattre O.
    Oncogene 21:6403-6412(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN CELL CYCLE.
  20. "P16INK4a is required for hSNF5 chromatin remodeler-induced cellular senescence in malignant rhabdoid tumor cells."
    Oruetxebarria I., Venturini F., Kekarainen T., Houweling A., Zuijderduijn L.M.P., Mohd-Sarip A., Vries R.G.J., Hoeben R.C., Verrijzer C.P.
    J. Biol. Chem. 279:3807-3816(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN CELL CYCLE.
  21. "Chromatin-remodeling factor INI1/hSNF5/BAF47 is involved in activation of the colony stimulating factor 1 promoter."
    Pan X., Song Z., Zhai L., Li X., Zeng X.
    Mol. Cells 20:183-188(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN ACTIVATION OF COLONY STIMULATING FACTOR 1 PROMOTER.
  22. "SMARCB1/INI1 tumor suppressor gene is frequently inactivated in epithelioid sarcomas."
    Modena P., Lualdi E., Facchinetti F., Galli L., Teixeira M.R., Pilotti S., Sozzi G.
    Cancer Res. 65:4012-4019(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISEASE.
  23. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-129, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic kidney.
  24. "Crosstalk between C/EBPbeta phosphorylation, arginine methylation, and SWI/SNF/Mediator implies an indexing transcription factor code."
    Kowenz-Leutz E., Pless O., Dittmar G., Knoblich M., Leutz A.
    EMBO J. 29:1105-1115(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH CEBPB.
  25. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  26. "Human SWI/SNF generates abundant, structurally altered dinucleosomes on polynucleosomal templates."
    Ulyanova N.P., Schnitzler G.R.
    Mol. Cell. Biol. 25:11156-11170(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION OF BAF COMPLEX IN CHROMATIN REMODELING.
  27. "Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex."
    Lange M., Kaynak B., Forster U.B., Toenjes M., Fischer J.J., Grimm C., Schlesinger J., Just S., Dunkel I., Krueger T., Mebus S., Lehrach H., Lurz R., Gobom J., Rottbauer W., Abdelilah-Seyfried S., Sperling S.
    Genes Dev. 22:2370-2384(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE BAF COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
  28. Cited for: INVOLVEMENT IN SWNTS1.
  29. "Evidence of a four-hit mechanism involving SMARCB1 and NF2 in schwannomatosis-associated schwannomas."
    Sestini R., Bacci C., Provenzano A., Genuardi M., Papi L.
    Hum. Mutat. 29:227-231(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: INVOLVEMENT IN SWNTS1.
  30. "Human PIH1 associates with histone H4 to mediate the glucose-dependent enhancement of pre-rRNA synthesis."
    Zhai N., Zhao Z.L., Cheng M.B., Di Y.W., Yan H.X., Cao C.Y., Dai H., Zhang Y., Shen Y.F.
    J. Mol. Cell Biol. 4:231-241(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH PIH1D1.
  31. Cited for: VARIANTS MRD15 LYS-364 DEL AND HIS-377.

Entry informationi

Entry nameiSNF5_HUMAN
AccessioniPrimary (citable) accession number: Q12824
Secondary accession number(s): O75784
, O95474, Q17S11, Q38GA1, Q76N08, Q9UBH2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: August 16, 2004
Last modified: May 27, 2015
This is version 153 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 22
    Human chromosome 22: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.