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Q122Y9 (Q122Y9_POLSJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G RuleBase RU003572 HAMAP MF_00641
EC=2.3.3.9 RuleBase RU003572 HAMAP MF_00641
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:Bpro_4517
OrganismPolaromonas sp. (strain JS666 / ATCC BAA-500) [Complete proteome] [HAMAP]
Taxonomic identifier296591 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Polaromonas

Protein attributes

Sequence length737 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. RuleBase RU003572 HAMAP MF_00641 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. RuleBase RU003572 HAMAP MF_00641 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity RuleBase RU003572 HAMAP MF_00641.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. RuleBase RU003572 HAMAP MF_00641

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3441Proton acceptor By similarity HAMAP MF_00641
Active site6421Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
Q122Y9 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 6455299C610F9CEA

FASTA73779,595
        10         20         30         40         50         60 
MTTTTTERTP AHRLQVATGL YRFIEDKVLP GTGVDSAAFW QGFDAIVADL APKNIALLAE 

        70         80         90        100        110        120 
RDRLQSEIDS WHQAHPGPIT DMPAYRAFLE QIGYLVAQPA NVTTTTADVD AELAEQAGPQ 

       130        140        150        160        170        180 
LVVPILNARY ALNAANARWG SLYDALYGTD AISESGGAEK GKAYNPLRGA RVIEFARTFL 

       190        200        210        220        230        240 
DQAAPLEAVS HKESAGYTVV DGKLVVTLTN GGRSSLQDNT QLIGYQGDAG APSSVLLKHN 

       250        260        270        280        290        300 
GIHIDIQIDR STPIGQSDAA GVSDLVLESA LSTILDLEDS VAVVDAEDKV LAYSNWLGIL 

       310        320        330        340        350        360 
QGTLTEEVSK GGKTFTRGLN PDRRYTGAQG GEVTLHGRSL MFVRNVGHLM TNPAILYEGG 

       370        380        390        400        410        420 
REIPEGIMDA VITTTIAMHD LKRKGQPGIR NSRAGSVYIV KPKMHGPQEV AFASELFSRV 

       430        440        450        460        470        480 
EALLGLPENT VKLGIMDEER RTSVNLKACI AAAGARVAFI NTGFLDRTGD EMHTAMLAGP 

       490        500        510        520        530        540 
MIRKGDMKTS AWIGAYEKNN VLVGLSCGLR GKAQIGKGMW AMPDLMAAML EQKIAHPRAG 

       550        560        570        580        590        600 
ANTAWVPSPT AATLHALHYH QVLVSDVQKE LEKIDANAER DNILNGLLQI PVVAEARWPA 

       610        620        630        640        650        660 
TEKQQELDNN AQGILGYVVR WIDQGVGCSK VPDIHNVALM EDRATLRISS QHIANWLHHG 

       670        680        690        700        710        720 
VVTKDQVIET FQRMAAVVDK QNASDPLYQN MAGHFDTSAA YKAACDLVFK GLEQPSGYTE 

       730 
PLLHAWRLKV KAGTASA

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References

[1]"Complete sequence of chromosome of Polaromonas sp. JS666."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JS666 / ATCC BAA-500.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000316 Genomic DNA. Translation: ABE46403.1.
RefSeqYP_551301.1. NC_007948.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ122Y9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4012792.
GenomeReviewsGene locus Bpro_4517 in contig CP000316_GR.
KEGGpol:Bpro_4517.
NMPDRfig|296591.1.peg.1120.
PATRIC22962318. VBIPolSp102244_4604.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHBG350005.
OMAENANWSV.
PhylomeDBQ122Y9.
ProtClustDBPRK02999.

Enzyme and pathway databases

BioCycPSP296591:BPRO_4517-MONOMER.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ122Y9_POLSJ
AccessionPrimary (citable) accession number: Q122Y9
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: December 14, 2011
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info