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Protein

Zinc finger protein YPR013C

Gene

YPR013C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri254 – 27623C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri282 – 30625C2H2-type 2PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: SGD
  • metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-34174-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein YPR013C
Gene namesi
Ordered Locus Names:YPR013C
ORF Names:LPZ12c
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XVI

Organism-specific databases

EuPathDBiFungiDB:YPR013C.
SGDiS000006217. YPR013C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 317317Zinc finger protein YPR013CPRO_0000255974Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi36191. 33 interactions.
IntActiQ12145. 1 interaction.
MINTiMINT-517882.

Structurei

3D structure databases

ProteinModelPortaliQ12145.
SMRiQ12145. Positions 256-310.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri254 – 27623C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri282 – 30625C2H2-type 2PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

GeneTreeiENSGT00730000113475.
InParanoidiQ12145.
OrthoDBiEOG78WM2P.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q12145-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNFSLSKQSS EKQSSYTDKS RSPNIGMCTV NYKSNLPLQV SAVDQLSTGK
60 70 80 90 100
GTQFYGHNSY KNERECYNST KINLPPISSL LPNFENNTPP NVDSRVQFPP
110 120 130 140 150
QQVYQSMNVV PIVNEIYTPI SMNATSDQYP IYYTESQQPI PHSQSPHLTS
160 170 180 190 200
SAPLMMPVMV PTVYKPLTPY DKEPITIASE PNFTAISMAS HPNAALELCH
210 220 230 240 250
DRPKSVPPGY GVLPTMQEAS NGRTKSEPGA VLNGSATFSD WKTDTRISST
260 270 280 290 300
KLRKQCPVCG KICSRPSTLK THYLIHTGDT PFKCTWEGCT KSFNVKSNML
310
RHLKSHERKR NKVLNTT
Length:317
Mass (Da):35,358
Last modified:November 1, 1996 - v1
Checksum:iF12CF522C7C889FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U31900 Genomic DNA. Translation: AAA97591.1.
Z49919 Genomic DNA. Translation: CAA90157.1.
Z71255 Genomic DNA. Translation: CAA95009.1.
BK006949 Genomic DNA. Translation: DAA11440.1.
PIRiS57546.
RefSeqiNP_015338.1. NM_001184110.1.

Genome annotation databases

EnsemblFungiiYPR013C; YPR013C; YPR013C.
GeneIDi856123.
KEGGisce:YPR013C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U31900 Genomic DNA. Translation: AAA97591.1.
Z49919 Genomic DNA. Translation: CAA90157.1.
Z71255 Genomic DNA. Translation: CAA95009.1.
BK006949 Genomic DNA. Translation: DAA11440.1.
PIRiS57546.
RefSeqiNP_015338.1. NM_001184110.1.

3D structure databases

ProteinModelPortaliQ12145.
SMRiQ12145. Positions 256-310.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi36191. 33 interactions.
IntActiQ12145. 1 interaction.
MINTiMINT-517882.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYPR013C; YPR013C; YPR013C.
GeneIDi856123.
KEGGisce:YPR013C.

Organism-specific databases

EuPathDBiFungiDB:YPR013C.
SGDiS000006217. YPR013C.

Phylogenomic databases

GeneTreeiENSGT00730000113475.
InParanoidiQ12145.
OrthoDBiEOG78WM2P.

Enzyme and pathway databases

BioCyciYEAST:G3O-34174-MONOMER.

Miscellaneous databases

PROiQ12145.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI."
    Bussey H., Storms R.K., Ahmed A., Albermann K., Allen E., Ansorge W., Araujo R., Aparicio A., Barrell B.G., Badcock K., Benes V., Botstein D., Bowman S., Brueckner M., Carpenter J., Cherry J.M., Chung E., Churcher C.M.
    , Coster F., Davis K., Davis R.W., Dietrich F.S., Delius H., DiPaolo T., Dubois E., Duesterhoeft A., Duncan M., Floeth M., Fortin N., Friesen J.D., Fritz C., Goffeau A., Hall J., Hebling U., Heumann K., Hilbert H., Hillier L.W., Hunicke-Smith S., Hyman R.W., Johnston M., Kalman S., Kleine K., Komp C., Kurdi O., Lashkari D., Lew H., Lin A., Lin D., Louis E.J., Marathe R., Messenguy F., Mewes H.-W., Mirtipati S., Moestl D., Mueller-Auer S., Namath A., Nentwich U., Oefner P., Pearson D., Petel F.X., Pohl T.M., Purnelle B., Rajandream M.A., Rechmann S., Rieger M., Riles L., Roberts D., Schaefer M., Scharfe M., Scherens B., Schramm S., Schroeder M., Sdicu A.-M., Tettelin H., Urrestarazu L.A., Ushinsky S., Vierendeels F., Vissers S., Voss H., Walsh S.V., Wambutt R., Wang Y., Wedler E., Wedler H., Winnett E., Zhong W.-W., Zollner A., Vo D.H., Hani J.
    Nature 387:103-105(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins."
    Boehm S., Frishman D., Mewes H.-W.
    Nucleic Acids Res. 25:2464-2469(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: DOMAIN.
  4. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYP013_YEAST
AccessioniPrimary (citable) accession number: Q12145
Secondary accession number(s): D6W424
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XVI
    Yeast (Saccharomyces cerevisiae) chromosome XVI: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.