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Q11WL3 (Q11WL3_CYTH3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine--D-alanine ligase A EMBL ABG58203.1
EC=6.3.2.4 EMBL ABG58203.1
Gene names
Name:ddlA EMBL ABG58203.1
Ordered Locus Names:CHU_0924
OrganismCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) [Complete proteome] [HAMAP] EMBL ABG58203.1
Taxonomic identifier269798 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Cytophaga ›

Protein attributes

Sequence length897 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
Q11WL3 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 74C2C50264BFB669

FASTA897101,061
        10         20         30         40         50         60 
MRIGIIFGGQ SREREISFAG GRTVYDNLNK DIFTTVPIFV DSLGQFILLD WQYIYKGTIR 

        70         80         90        100        110        120 
DFYPPFEFLP KSIHGFQVYV ESLGDLPKEE RDAMIQKVGR KIEPSDLKEL IDFAFLALHG 

       130        140        150        160        170        180 
PYGEDGAIQG MLDWNNIPYS GSGILPSAIG INKYIQKKLV AQASFNGPNY VTYKKSTWLK 

       190        200        210        220        230        240 
GADTKALLAH FESSVGFPFV VKAPSQGSSI GITVISERNE EKLKQALNRS FFLQEITAAD 

       250        260        270        280        290        300 
WNTKTEHAKI KWVATLTDIR DGIGMPVNDV LQGKTIYHPE ELLAHLNQSL SSKERVLLES 

       310        320        330        340        350        360 
LDNEEEIIIE SFIKGQEFSC IVIQDEDGNP IALPPTGIVK GNDFFDYRSK YLPGMSRKIT 

       370        380        390        400        410        420 
PIDIPGEQVE LIRSECCRLY STLQFNVYAR IDGFISPEGE VFLNDPNTTS GMMPSSFFFH 

       430        440        450        460        470        480 
QAAEIGLNPS QFLTYIIRTS IQERIKDGKR SLRYKQLLAT LDQAISSEKN SSKEKIKIAV 

       490        500        510        520        530        540 
VMGGYSSERH ISVESGRNIF EKLSSSTKYQ PLPVFLTGSD EQHRLFILPI NILLKDNADD 

       550        560        570        580        590        600 
IREKVINFKG HHPIIEHIAK ETESISSRYV SNAIKDPKEI SYKELSELVD GVFIALHGRP 

       610        620        630        640        650        660 
GEDGSMQKEL EKYQLPYNGS GIQSSQITIN KFETNRILRE HGISVANHRM VYKQEWLDAG 

       670        680        690        700        710        720 
EKLLSEIESG FIYPIIAKPS DDGCSSAVKK IKNRDELRAY TRLMFGEEAI QGSVSSSVLG 

       730        740        750        760        770        780 
LKYNEEFPQK DYFLIEDLVS KGNAKHFLEV TGGLMTRFND KGNVEYEIFE PSESLATGDV 

       790        800        810        820        830        840 
LSLEEKFLAG EGQNITPARY TTNKADYEQV ASEVRATLKR VAEVLNIQGY ARIDAFVRVF 

       850        860        870        880        890 
ENNRSETIII EVNSLPGMTP ATCIFHQTAI NGYKPYDFID NILTFGIERE KKKLAKI

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References

[1]"Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii."
Xie G., Bruce D.C., Challacombe J.F., Chertkov O., Detter J.C., Gilna P., Han C.S., Lucas S., Misra M., Myers G.L., Richardson P., Tapia R., Thayer N., Thompson L.S., Brettin T.S., Henrissat B., Wilson D.B., McBride M.J.
Appl. Environ. Microbiol. 73:3536-3546(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33406 / NCIMB 9469.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000383 Genomic DNA. Translation: ABG58203.1.
RefSeqYP_677543.1. NC_008255.1.

3D structure databases

ProteinModelPortalQ11WL3.
ModBaseSearch...

Protein-protein interaction databases

STRING269798.CHU_0924.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG58203; ABG58203; CHU_0924.
GeneID4184112.
KEGGchu:CHU_0924.
PATRIC21592697. VBICytHut34013_0924.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1181.
HOGENOMHOG000121145.
KOK01921.
OMAMSGTNVW.
ProtClustDBCLSK757863.

Enzyme and pathway databases

BioCycCHUT269798:GJ83-926-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 2 hits.
3.30.470.20. 3 hits.
3.40.50.20. 2 hits.
HAMAPMF_00047. Dala_Dala_lig.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 4 hits.
PF01820. Dala_Dala_lig_N. 2 hits.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 2 hits.
PROSITEPS50975. ATP_GRASP. 2 hits.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ11WL3_CYTH3
AccessionPrimary (citable) accession number: Q11WL3
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info