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Q11R79

- Q11R79_CYTH3

UniProt

Q11R79 - Q11R79_CYTH3

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

CHU_2837

Organism
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCHUT269798:GJ83-2833-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:CHU_2837Imported
    OrganismiCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)Imported
    Taxonomic identifieri269798 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeCytophaga
    ProteomesiUP000001822: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi269798.CHU_2837.

    Structurei

    3D structure databases

    ProteinModelPortaliQ11R79.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiTTEFEAI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q11R79-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALETYKEKR NFKHTPEPVA KKNAAGTELK FVIQRHAASH LHYDFRLEME    50
    GVLKSWAVPK GPSLNPSDKR LAMMVEDHPF AYRTFHGVIP EGNYGAGIVE 100
    IWDEGTYHAI GNEDRKTGEK ELLADLKKGN LKFVLHGKKL KGEFALVKIK 150
    NNNSSKDNAW LLIKHKDAYA TEDAYSSEDY VPANSKIVKK TAASKKPATP 200
    VSKKSAIKMV DDKPATDKKK VQSAPAQKIK QGKDPMPHEV KPMLAKLKDA 250
    PFDSPEWIFE IKWDGYRAIA EIDQGKVELY SRNLISFTKK YKPIVESLQS 300
    FGHNVVLDGE VIVLNADGTS SFQMLQQYDE TPSPDLCYCV FDILFLDGRD 350
    LRDLPLLERK AILKKVIPDL PNLKYSDHVE KEGIRFFELA KKNKLEGIMA 400
    KRADSIYRLG SRSDQWIKLK IVKSQEAIIC GFTAPRNSRK DFGALILGAY 450
    ENGRLVYIGH TGGGFTMALL ASTLKLMKPL IQKESPFDVK IKTNEKVTWI 500
    KPKLVCAIAF SEWTSDGHMR QPIFQGMRID KKVSEVTREL PTVINVPQDN 550
    AMEVTRNIKQ TAAKTSTKKT AHKKAASKKT TTNKKTTDVA AAENSKAGEF 600
    KIDGQVLKIS NRSKVYWPED GYTKGDLIDY YMQAADYILP YLKDRPESLN 650
    RHPNGIDGSS FFQKDMGDTL PDWIEAKEIF SESNSKDINY VLCQNKATLI 700
    YMANLGCIEI NPWNSRVKKI EYPDFIVIDL DPSDNNTFDE VIETALVVKK 750
    ILDKGGIDAY CKTSGATGLH IYIPLGAKYT YEQGKNFAHI IAQLTNNELP 800
    ELTSLVRNPK ERKKQIYVDY LQNRGGQTLA APYSVRPKPG ATVSTPLEWK 850
    EVKKGLHPST FTIKTIFKRL EKKGDLFKGV LGKGIDMEKC LKKLGA 896
    Length:896
    Mass (Da):100,886
    Last modified:August 22, 2006 - v1
    Checksum:iC5891BA8D422C24F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000383 Genomic DNA. Translation: ABG60085.1.
    RefSeqiWP_011586195.1. NC_008255.1.
    YP_679427.1. NC_008255.1.

    Genome annotation databases

    EnsemblBacteriaiABG60085; ABG60085; CHU_2837.
    GeneIDi4183403.
    KEGGichu:CHU_2837.
    PATRICi21596547. VBICytHut34013_2828.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000383 Genomic DNA. Translation: ABG60085.1 .
    RefSeqi WP_011586195.1. NC_008255.1.
    YP_679427.1. NC_008255.1.

    3D structure databases

    ProteinModelPortali Q11R79.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 269798.CHU_2837.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG60085 ; ABG60085 ; CHU_2837 .
    GeneIDi 4183403.
    KEGGi chu:CHU_2837.
    PATRICi 21596547. VBICytHut34013_2828.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi TTEFEAI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci CHUT269798:GJ83-2833-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33406 / NCIMB 9469Imported.

    Entry informationi

    Entry nameiQ11R79_CYTH3
    AccessioniPrimary (citable) accession number: Q11R79
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 22, 2006
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3