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Q11R79

- Q11R79_CYTH3

UniProt

Q11R79 - Q11R79_CYTH3

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Protein
Submitted name: ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
Gene
CHU_2837
Organism
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCHUT269798:GJ83-2833-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:CHU_2837Imported
OrganismiCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)Imported
Taxonomic identifieri269798 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeCytophaga
ProteomesiUP000001822: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi269798.CHU_2837.

Structurei

3D structure databases

ProteinModelPortaliQ11R79.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiTTEFEAI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q11R79-1 [UniParc]FASTAAdd to Basket

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MALETYKEKR NFKHTPEPVA KKNAAGTELK FVIQRHAASH LHYDFRLEME    50
GVLKSWAVPK GPSLNPSDKR LAMMVEDHPF AYRTFHGVIP EGNYGAGIVE 100
IWDEGTYHAI GNEDRKTGEK ELLADLKKGN LKFVLHGKKL KGEFALVKIK 150
NNNSSKDNAW LLIKHKDAYA TEDAYSSEDY VPANSKIVKK TAASKKPATP 200
VSKKSAIKMV DDKPATDKKK VQSAPAQKIK QGKDPMPHEV KPMLAKLKDA 250
PFDSPEWIFE IKWDGYRAIA EIDQGKVELY SRNLISFTKK YKPIVESLQS 300
FGHNVVLDGE VIVLNADGTS SFQMLQQYDE TPSPDLCYCV FDILFLDGRD 350
LRDLPLLERK AILKKVIPDL PNLKYSDHVE KEGIRFFELA KKNKLEGIMA 400
KRADSIYRLG SRSDQWIKLK IVKSQEAIIC GFTAPRNSRK DFGALILGAY 450
ENGRLVYIGH TGGGFTMALL ASTLKLMKPL IQKESPFDVK IKTNEKVTWI 500
KPKLVCAIAF SEWTSDGHMR QPIFQGMRID KKVSEVTREL PTVINVPQDN 550
AMEVTRNIKQ TAAKTSTKKT AHKKAASKKT TTNKKTTDVA AAENSKAGEF 600
KIDGQVLKIS NRSKVYWPED GYTKGDLIDY YMQAADYILP YLKDRPESLN 650
RHPNGIDGSS FFQKDMGDTL PDWIEAKEIF SESNSKDINY VLCQNKATLI 700
YMANLGCIEI NPWNSRVKKI EYPDFIVIDL DPSDNNTFDE VIETALVVKK 750
ILDKGGIDAY CKTSGATGLH IYIPLGAKYT YEQGKNFAHI IAQLTNNELP 800
ELTSLVRNPK ERKKQIYVDY LQNRGGQTLA APYSVRPKPG ATVSTPLEWK 850
EVKKGLHPST FTIKTIFKRL EKKGDLFKGV LGKGIDMEKC LKKLGA 896
Length:896
Mass (Da):100,886
Last modified:August 22, 2006 - v1
Checksum:iC5891BA8D422C24F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000383 Genomic DNA. Translation: ABG60085.1.
RefSeqiWP_011586195.1. NC_008255.1.
YP_679427.1. NC_008255.1.

Genome annotation databases

EnsemblBacteriaiABG60085; ABG60085; CHU_2837.
GeneIDi4183403.
KEGGichu:CHU_2837.
PATRICi21596547. VBICytHut34013_2828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000383 Genomic DNA. Translation: ABG60085.1 .
RefSeqi WP_011586195.1. NC_008255.1.
YP_679427.1. NC_008255.1.

3D structure databases

ProteinModelPortali Q11R79.
ModBasei Search...

Protein-protein interaction databases

STRINGi 269798.CHU_2837.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG60085 ; ABG60085 ; CHU_2837 .
GeneIDi 4183403.
KEGGi chu:CHU_2837.
PATRICi 21596547. VBICytHut34013_2828.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi TTEFEAI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci CHUT269798:GJ83-2833-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33406 / NCIMB 9469.

Entry informationi

Entry nameiQ11R79_CYTH3
AccessioniPrimary (citable) accession number: Q11R79
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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