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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

CHU_2837

Organism
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCHUT269798:GJ83-2833-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:CHU_2837Imported
OrganismiCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)Imported
Taxonomic identifieri269798 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeCytophaga
ProteomesiUP000001822 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi269798.CHU_2837.

Structurei

3D structure databases

ProteinModelPortaliQ11R79.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q11R79-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALETYKEKR NFKHTPEPVA KKNAAGTELK FVIQRHAASH LHYDFRLEME
60 70 80 90 100
GVLKSWAVPK GPSLNPSDKR LAMMVEDHPF AYRTFHGVIP EGNYGAGIVE
110 120 130 140 150
IWDEGTYHAI GNEDRKTGEK ELLADLKKGN LKFVLHGKKL KGEFALVKIK
160 170 180 190 200
NNNSSKDNAW LLIKHKDAYA TEDAYSSEDY VPANSKIVKK TAASKKPATP
210 220 230 240 250
VSKKSAIKMV DDKPATDKKK VQSAPAQKIK QGKDPMPHEV KPMLAKLKDA
260 270 280 290 300
PFDSPEWIFE IKWDGYRAIA EIDQGKVELY SRNLISFTKK YKPIVESLQS
310 320 330 340 350
FGHNVVLDGE VIVLNADGTS SFQMLQQYDE TPSPDLCYCV FDILFLDGRD
360 370 380 390 400
LRDLPLLERK AILKKVIPDL PNLKYSDHVE KEGIRFFELA KKNKLEGIMA
410 420 430 440 450
KRADSIYRLG SRSDQWIKLK IVKSQEAIIC GFTAPRNSRK DFGALILGAY
460 470 480 490 500
ENGRLVYIGH TGGGFTMALL ASTLKLMKPL IQKESPFDVK IKTNEKVTWI
510 520 530 540 550
KPKLVCAIAF SEWTSDGHMR QPIFQGMRID KKVSEVTREL PTVINVPQDN
560 570 580 590 600
AMEVTRNIKQ TAAKTSTKKT AHKKAASKKT TTNKKTTDVA AAENSKAGEF
610 620 630 640 650
KIDGQVLKIS NRSKVYWPED GYTKGDLIDY YMQAADYILP YLKDRPESLN
660 670 680 690 700
RHPNGIDGSS FFQKDMGDTL PDWIEAKEIF SESNSKDINY VLCQNKATLI
710 720 730 740 750
YMANLGCIEI NPWNSRVKKI EYPDFIVIDL DPSDNNTFDE VIETALVVKK
760 770 780 790 800
ILDKGGIDAY CKTSGATGLH IYIPLGAKYT YEQGKNFAHI IAQLTNNELP
810 820 830 840 850
ELTSLVRNPK ERKKQIYVDY LQNRGGQTLA APYSVRPKPG ATVSTPLEWK
860 870 880 890
EVKKGLHPST FTIKTIFKRL EKKGDLFKGV LGKGIDMEKC LKKLGA
Length:896
Mass (Da):100,886
Last modified:August 22, 2006 - v1
Checksum:iC5891BA8D422C24F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000383 Genomic DNA. Translation: ABG60085.1.
RefSeqiWP_011586195.1. NC_008255.1.
YP_679427.1. NC_008255.1.

Genome annotation databases

EnsemblBacteriaiABG60085; ABG60085; CHU_2837.
KEGGichu:CHU_2837.
PATRICi21596547. VBICytHut34013_2828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000383 Genomic DNA. Translation: ABG60085.1.
RefSeqiWP_011586195.1. NC_008255.1.
YP_679427.1. NC_008255.1.

3D structure databases

ProteinModelPortaliQ11R79.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269798.CHU_2837.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG60085; ABG60085; CHU_2837.
KEGGichu:CHU_2837.
PATRICi21596547. VBICytHut34013_2828.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciCHUT269798:GJ83-2833-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33406 / NCIMB 9469Imported.

Entry informationi

Entry nameiQ11R79_CYTH3
AccessioniPrimary (citable) accession number: Q11R79
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 27, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.