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Q11R79 (Q11R79_CYTH3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABG60085.1
EC=6.5.1.1 EMBL ABG60085.1
Gene names
Ordered Locus Names:CHU_2837
OrganismCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) [Complete proteome] [HAMAP] EMBL ABG60085.1
Taxonomic identifier269798 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Cytophaga ›

Protein attributes

Sequence length896 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q11R79 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: C5891BA8D422C24F

FASTA896100,886
        10         20         30         40         50         60 
MALETYKEKR NFKHTPEPVA KKNAAGTELK FVIQRHAASH LHYDFRLEME GVLKSWAVPK 

        70         80         90        100        110        120 
GPSLNPSDKR LAMMVEDHPF AYRTFHGVIP EGNYGAGIVE IWDEGTYHAI GNEDRKTGEK 

       130        140        150        160        170        180 
ELLADLKKGN LKFVLHGKKL KGEFALVKIK NNNSSKDNAW LLIKHKDAYA TEDAYSSEDY 

       190        200        210        220        230        240 
VPANSKIVKK TAASKKPATP VSKKSAIKMV DDKPATDKKK VQSAPAQKIK QGKDPMPHEV 

       250        260        270        280        290        300 
KPMLAKLKDA PFDSPEWIFE IKWDGYRAIA EIDQGKVELY SRNLISFTKK YKPIVESLQS 

       310        320        330        340        350        360 
FGHNVVLDGE VIVLNADGTS SFQMLQQYDE TPSPDLCYCV FDILFLDGRD LRDLPLLERK 

       370        380        390        400        410        420 
AILKKVIPDL PNLKYSDHVE KEGIRFFELA KKNKLEGIMA KRADSIYRLG SRSDQWIKLK 

       430        440        450        460        470        480 
IVKSQEAIIC GFTAPRNSRK DFGALILGAY ENGRLVYIGH TGGGFTMALL ASTLKLMKPL 

       490        500        510        520        530        540 
IQKESPFDVK IKTNEKVTWI KPKLVCAIAF SEWTSDGHMR QPIFQGMRID KKVSEVTREL 

       550        560        570        580        590        600 
PTVINVPQDN AMEVTRNIKQ TAAKTSTKKT AHKKAASKKT TTNKKTTDVA AAENSKAGEF 

       610        620        630        640        650        660 
KIDGQVLKIS NRSKVYWPED GYTKGDLIDY YMQAADYILP YLKDRPESLN RHPNGIDGSS 

       670        680        690        700        710        720 
FFQKDMGDTL PDWIEAKEIF SESNSKDINY VLCQNKATLI YMANLGCIEI NPWNSRVKKI 

       730        740        750        760        770        780 
EYPDFIVIDL DPSDNNTFDE VIETALVVKK ILDKGGIDAY CKTSGATGLH IYIPLGAKYT 

       790        800        810        820        830        840 
YEQGKNFAHI IAQLTNNELP ELTSLVRNPK ERKKQIYVDY LQNRGGQTLA APYSVRPKPG 

       850        860        870        880        890 
ATVSTPLEWK EVKKGLHPST FTIKTIFKRL EKKGDLFKGV LGKGIDMEKC LKKLGA

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References

[1]"Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii."
Xie G., Bruce D.C., Challacombe J.F., Chertkov O., Detter J.C., Gilna P., Han C.S., Lucas S., Misra M., Myers G.L., Richardson P., Tapia R., Thayer N., Thompson L.S., Brettin T.S., Henrissat B., Wilson D.B., McBride M.J.
Appl. Environ. Microbiol. 73:3536-3546(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33406 / NCIMB 9469.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000383 Genomic DNA. Translation: ABG60085.1.
RefSeqYP_679427.1. NC_008255.1.

3D structure databases

ProteinModelPortalQ11R79.
ModBaseSearch...

Protein-protein interaction databases

STRING269798.CHU_2837.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG60085; ABG60085; CHU_2837.
GeneID4183403.
KEGGchu:CHU_2837.
PATRIC21596547. VBICytHut34013_2828.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALAMMVED.
ProtClustDBCLSK830193.

Enzyme and pathway databases

BioCycCHUT269798:GJ83-2833-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ11R79_CYTH3
AccessionPrimary (citable) accession number: Q11R79
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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