Q11PA6 (Q11PA6_CYTH3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ABG60757.1

Gene names

Ordered Locus Names:

CHU_3524

Organism

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) [Complete proteome] [HAMAP] EMBL ABG60757.1

Taxonomic identifier

269798 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Cytophaga › Cytophaga hutchinsonii

Protein attributes

Sequence length	538 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABG60757.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q11PA6 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 1C51F0839C1178ED	FASTA	538	61,470
	10 20 30 40 50 60 MKKFAELFTE LDQTTRTNAK IDALADYFAV SDAADALWAV ALLTGKKPKR TVKTSELKLW 70 80 90 100 110 120 SMELSGVNEW LFEESYHVVG DLAETITLLL PAAETQADYS LSGMMALLKT LDTKTEEQRK 130 140 150 160 170 180 NIIQEIWMQL STAERFVFNK LITGSFRVGV SQQLVIKALA KNYKLVESNV AHRLMGNWLP 190 200 210 220 230 240 DTSTLDNLLF NTDIQEDLSK PYPFYLAYQL DVPAETLGDI TAWQIEYKYD GIRGQIIVRR 250 260 270 280 290 300 GELFVWSRGE ELMTDKFPEF ERLKEALPDG TVIDGEILPF NGNEPMPFHI MQTRIGRKNL 310 320 330 340 350 360 SKKSLADAPL AMMCYDLLEY KGNDVRLLPM SERRALLENL LKELAEKNSA AAAVLKLSPV 370 380 390 400 410 420 FVCKTVEEMV LLRLASRDRM CEGLMLKHKD SLYEAGRRRG KWWKWKIDPL TVDGVLLYAQ 430 440 450 460 470 480 RGHGRRADLY TDYTFAVWSG EELVPFAKAY SGLTDKELVE VDNWVKKNTK EKFGPVRSVT 490 500 510 520 530 PELVFEIAFE GINPSPRHKS GVALRFPRIL RWRKDKGIKD ANSKEDLLHL IQQLNRTA

References

[1]

"Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii." Xie G., Bruce D.C., Challacombe J.F., Chertkov O., Detter J.C., Gilna P., Han C.S., Lucas S., Misra M., Myers G.L., Richardson P., Tapia R., Thayer N., Thompson L.S., Brettin T.S., Henrissat B., Wilson D.B., McBride M.J. Appl. Environ. Microbiol. 73:3536-3546(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33406 / NCIMB 9469.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000383 Genomic DNA. Translation: ABG60757.1.
RefSeq	YP_680100.1. NC_008255.1.
3D structure databases
ProteinModelPortal	Q11PA6.
ModBase	Search...
Protein-protein interaction databases
STRING	269798.CHU_3524.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG60757; ABG60757; CHU_3524.
GeneID	4183547.
KEGG	chu:CHU_3524.
PATRIC	21597921. VBICytHut34013_3505.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	CHUT269798:GJ83-3517-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q11PA6_CYTH3

Accession

Primary (citable) accession number: Q11PA6

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	May 1, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)