Q11JL3 (Q11JL3_MESSB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABG62412.1
EC=5.99.1.3 EMBL ABG62412.1

Gene names

Ordered Locus Names:

Meso_1015

Organism

Mesorhizobium sp. (strain BNC1) [Complete proteome] [HAMAP]

Taxonomic identifier

266779 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Chelativorans

Protein attributes

Sequence length	683 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding SAAS SAAS002288 RuleBase RU000380 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q11JL3 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 18E3C63B1F3E8E92	FASTA	683	74,895
	10 20 30 40 50 60 MDDTNDLFAT LGSSSAERVK QPEPIATARK AQRAPSPARD ASDSYSAADI EVLEGLEPVR 70 80 90 100 110 120 RRPGMYIGGT DDKALHHLFA EVIDNSMDEA VAGHATFIDV ELSEDGFLTV TDNGRGIPVD 130 140 150 160 170 180 PHPKFKDKSA LEVIMTTLHS GGKFDSKVYE TSGGLHGVGV SVVNALSELL EVEVARGRQL 190 200 210 220 230 240 FRQRFSRGKP LGPLESVGEV HNRRGTRTRF KPDPEIFGAG AKFEPARLYR MTRSKAYLFG 250 260 270 280 290 300 GVEIRWNCAP SLLKEKDETP DKAVFHFPGG LKDYLSNSID GEFQVTREVF AGKTEKQSGH 310 320 330 340 350 360 GAVEWAVTWY GGDAFLNSYC NTIPTPEGGT HEQGFRNALL RGLRGYADLT GNKRASIVTA 370 380 390 400 410 420 EDVMISAAGM LSVFVREPEF VGQTKDKLAT AAAMRIVENA VRDPFDHWLA DNPAEASKLL 430 440 450 460 470 480 DWVIARADER LKRRQEKEVS RKSAVRKLRL PGKLADCTVG AAAGAEIFIV EGDSAGGSAK 490 500 510 520 530 540 QARNRATQAV LPLRGKILNV ASAGSGKLAA NQQITDLIQA LGCGTRSKYR EEDLRYERVI 550 560 570 580 590 600 IMTDADVDGA HIASLLITFF YQEMPQLITG GHLFLAVPPL YRISQGGKTM YARDDAHKDE 610 620 630 640 650 660 LLKTEFTGRG KVEIGRFKGL GEMMPAQLKE TTMDPKYRTL LRVEVLDTPE ATSSAVDALM 670 680 GTKPEARFRF IQENAEFVEE LDI

References

[1]

"Complete sequence of chromosome of Mesorhizobium sp. BNC1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BNC1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000390 Genomic DNA. Translation: ABG62412.1.
RefSeq	YP_673577.1. NC_008254.1.
3D structure databases
ProteinModelPortal	Q11JL3.
ModBase	Search...
Protein-protein interaction databases
STRING	Q11JL3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4180529.
GenomeReviews	Gene locus Meso_1015 in contig CP000390_GR.
KEGG	mes:Meso_1015.
NMPDR	fig|266779.1.peg.2566.
PATRIC	21341988. VBICheSp72577_1635.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
PhylomeDB	Q11JL3.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q11JL3_MESSB

Accession

Primary (citable) accession number: Q11JL3

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)