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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Meso_1150

Organism
Chelativorans sp. (strain BNC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCSP266779:GI09-1168-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Meso_1150Imported
OrganismiChelativorans sp. (strain BNC1)Imported
Taxonomic identifieri266779 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeChelativorans
ProteomesiUP000001820: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi266779.Meso_1150.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q11J79-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTTYRRKR NFSATPEPPG EEKASPRGDS FVIQKHAARR LHYDLRLEMD
60 70 80 90 100
GVLKSWAVTR GPSLVPGEKR LAVHVEDHPL DYGDFEGTIP KGEYGGGTVI
110 120 130 140 150
VWDRGSWSPI GDAKKGYAKG HLEFELHGEK LTGRWHLVRM AKKPREKKEN
160 170 180 190 200
WLLIKGEDDA ARSEADPDIL EERPESVKTG RVIEEVEGEA PGWSSKTGRI
210 220 230 240 250
EQPAEAKPAR KKRATKAGSE KSAGEKISVP KRAKKAGYPG FIEPALATLR
260 270 280 290 300
STPPPGGRWL HEIKFDGYRL QAHIRDGKAR LLTRSGLDWT EKFGDAIVTA
310 320 330 340 350
LGSLPVRQAI MDGELIVEGA GGASDFSALQ AALSEGRVDR MALYLFDLLY
360 370 380 390 400
LDGYDFRPVP LAERKATLQK LLDGAPPVLR YSEHFEEDGE LVFRHACRLS
410 420 430 440 450
LEGIVSKAGD AAYRSGRGKD WIKSKCSMRQ EFVVAGYVPS TTSNRAIGSL
460 470 480 490 500
VLGYYENERL IYAGRVGTGF SHALAQDLFK RLDKMRIAKS PFAKKLTSEE
510 520 530 540 550
ARGAKFVRPE LVAEVEFRTW TADNLIRHAS FRGLREDKSA TDVTRETNQS
560 570 580 590 600
KPAERAAPAI RLTHPDRIYW KDAGVTKQGL SDYYAEVWPR MGPFIVNRPL
610 620 630 640 650
ALVRCPDGVE GQCFFQKHAW RGQSHEIMKA VDPEDDEPII AIDGLPGLIG
660 670 680 690 700
LVQGGTLEIH PWGSQLEDLE RPDLINMDLD PGPDVTWQDV IDAAREVRER
710 720 730 740 750
LAQAGLESFV KTSGGKGLHV VAPLKPRADW PEVKAFAKGI ADAMASDTPE
760 770 780 790 800
RFVATVTKAK RKGKILVDYL RNGRGATAVA PYSTRARAGA AVSMPLFWEE
810 820 830 840
LSPAITADYF TVANAPTRLA AIGKDPWEDF WRAAVPLGRK ARRAA
Length:845
Mass (Da):93,528
Last modified:August 22, 2006 - v1
Checksum:iF03B77FC10FAFC6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000390 Genomic DNA. Translation: ABG62546.1.
RefSeqiWP_011580489.1. NC_008254.1.
YP_673711.1. NC_008254.1.

Genome annotation databases

EnsemblBacteriaiABG62546; ABG62546; Meso_1150.
GeneIDi4180741.
KEGGimes:Meso_1150.
PATRICi21342274. VBICheSp72577_1773.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000390 Genomic DNA. Translation: ABG62546.1.
RefSeqiWP_011580489.1. NC_008254.1.
YP_673711.1. NC_008254.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266779.Meso_1150.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG62546; ABG62546; Meso_1150.
GeneIDi4180741.
KEGGimes:Meso_1150.
PATRICi21342274. VBICheSp72577_1773.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciCSP266779:GI09-1168-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BNC1Imported.

Entry informationi

Entry nameiQ11J79_CHESB
AccessioniPrimary (citable) accession number: Q11J79
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: March 4, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.