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Q11J79

- Q11J79_CHESB

UniProt

Q11J79 - Q11J79_CHESB

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Meso_1150

Organism
Chelativorans sp. (strain BNC1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCSP266779:GI09-1168-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
    Gene namesi
    Ordered Locus Names:Meso_1150Imported
    OrganismiChelativorans sp. (strain BNC1)Imported
    Taxonomic identifieri266779 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeChelativorans
    ProteomesiUP000001820: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi266779.Meso_1150.

    Structurei

    3D structure databases

    ProteinModelPortaliQ11J79.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q11J79-1 [UniParc]FASTAAdd to Basket

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    MALTTYRRKR NFSATPEPPG EEKASPRGDS FVIQKHAARR LHYDLRLEMD    50
    GVLKSWAVTR GPSLVPGEKR LAVHVEDHPL DYGDFEGTIP KGEYGGGTVI 100
    VWDRGSWSPI GDAKKGYAKG HLEFELHGEK LTGRWHLVRM AKKPREKKEN 150
    WLLIKGEDDA ARSEADPDIL EERPESVKTG RVIEEVEGEA PGWSSKTGRI 200
    EQPAEAKPAR KKRATKAGSE KSAGEKISVP KRAKKAGYPG FIEPALATLR 250
    STPPPGGRWL HEIKFDGYRL QAHIRDGKAR LLTRSGLDWT EKFGDAIVTA 300
    LGSLPVRQAI MDGELIVEGA GGASDFSALQ AALSEGRVDR MALYLFDLLY 350
    LDGYDFRPVP LAERKATLQK LLDGAPPVLR YSEHFEEDGE LVFRHACRLS 400
    LEGIVSKAGD AAYRSGRGKD WIKSKCSMRQ EFVVAGYVPS TTSNRAIGSL 450
    VLGYYENERL IYAGRVGTGF SHALAQDLFK RLDKMRIAKS PFAKKLTSEE 500
    ARGAKFVRPE LVAEVEFRTW TADNLIRHAS FRGLREDKSA TDVTRETNQS 550
    KPAERAAPAI RLTHPDRIYW KDAGVTKQGL SDYYAEVWPR MGPFIVNRPL 600
    ALVRCPDGVE GQCFFQKHAW RGQSHEIMKA VDPEDDEPII AIDGLPGLIG 650
    LVQGGTLEIH PWGSQLEDLE RPDLINMDLD PGPDVTWQDV IDAAREVRER 700
    LAQAGLESFV KTSGGKGLHV VAPLKPRADW PEVKAFAKGI ADAMASDTPE 750
    RFVATVTKAK RKGKILVDYL RNGRGATAVA PYSTRARAGA AVSMPLFWEE 800
    LSPAITADYF TVANAPTRLA AIGKDPWEDF WRAAVPLGRK ARRAA 845
    Length:845
    Mass (Da):93,528
    Last modified:August 22, 2006 - v1
    Checksum:iF03B77FC10FAFC6A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000390 Genomic DNA. Translation: ABG62546.1.
    RefSeqiWP_011580489.1. NC_008254.1.
    YP_673711.1. NC_008254.1.

    Genome annotation databases

    EnsemblBacteriaiABG62546; ABG62546; Meso_1150.
    GeneIDi4180741.
    KEGGimes:Meso_1150.
    PATRICi21342274. VBICheSp72577_1773.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000390 Genomic DNA. Translation: ABG62546.1 .
    RefSeqi WP_011580489.1. NC_008254.1.
    YP_673711.1. NC_008254.1.

    3D structure databases

    ProteinModelPortali Q11J79.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 266779.Meso_1150.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG62546 ; ABG62546 ; Meso_1150 .
    GeneIDi 4180741.
    KEGGi mes:Meso_1150.
    PATRICi 21342274. VBICheSp72577_1773.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci CSP266779:GI09-1168-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BNC1Imported.

    Entry informationi

    Entry nameiQ11J79_CHESB
    AccessioniPrimary (citable) accession number: Q11J79
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 22, 2006
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3