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Reviewed, UniProtKB/Swiss-Prot Q11GB4 (HEM6_MESSB)

Last modified November 3, 2009. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Coproporphyrinogen-III oxidase, aerobic
      Short name=Coproporphyrinogenase
      Short name=Coprogen oxidase
    EC=1.3.3.3
Gene names
Name: hemF
Ordered Locus Names: Meso_2169
OrganismMesorhizobium sp. (strain BNC1) [Complete proteome] [HAMAP]
Taxonomic identifier266779 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Chelativorans

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Protein attributes

Sequence length304 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Catalytic activity

Coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O. HAMAP MF_00333

Pathway

Porphyrin metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (O2 route): step 1/1. HAMAP MF_00333

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the aerobic coproporphyrinogen-III oxidase family.

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Ontologies

Keywords
   Biological processPorphyrin biosynthesis
   Cellular componentCytoplasm
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processoxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

porphyrin biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functioncoproporphyrinogen oxidase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 304304Coproporphyrinogen-III oxidase, aerobic HAMAP MF_00333
PRO_1000119806

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Sequences

Sequence LengthMass (Da)Tools
Q11GB4-1 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 117571DECF290102

FASTA30434,672
        10         20         30         40         50         60 
MEQPHIPAGL PEDVENKKEA ARAWFETLRD KICAALEGLE DELSGPHSSY APGRFEQTPW 

        70         80         90        100        110        120 
LRQEGAGGGG VMSIMHGRVF EKVGVHTSTV HGEFSPEFRR QIPGAEEDPR FWASGISVIA 

       130        140        150        160        170        180 
HPQNPHVPTV HMNTRMVVTT RQWFGGGADL TPMLNRRRSQ EDPDAIAFHK AMRFVCERHA 

       190        200        210        220        230        240 
AVADYEKFKN WCEEYFFLPH RNEPRGIGGI FYDWLKSPEE NGGWDADFAF TQDVGRAFVM 

       250        260        270        280        290        300 
VYQHIVRKNF NTNWTEADRE EQLIRRGRYV EFNLLYDRGT IFGLKTGGNV NSILSSLPPV 


VKWP

« Hide

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References

[1]"Complete sequence of chromosome of Mesorhizobium sp. BNC1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000390 Genomic DNA. Translation: ABG63561.1.
RefSeqYP_674726.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ11GB4.

Genome annotation databases

GeneID4182254.
GenomeReviewsGene locus Meso_2169 in contig CP000390_GR.
KEGGmes:Meso_2169.
NMPDRfig|266779.1.peg.1753.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ11GB4.
OMAVKAYLLD.

Enzyme and pathway databases

BioCycMSP266779:MESO_2169-MON.

Family and domain databases

HAMAPMF_00333.
[Tree]
InterProIPR001260. Coprogen_oxidas.
IPR018375. Coproporphyrinogen-3_ox_CS.
[Graphical view]
Gene3DG3DSA:3.40.1500.10. Coprogen_oxidas. 1 hit.
PANTHERPTHR10755. Coprogen_oxidas. 1 hit.
PfamPF01218. Coprogen_oxidas. 1 hit.
[Graphical view]
PIRSFPIRSF000166. Coproporphyri_ox. 1 hit.
PRINTSPR00073. COPRGNOXDASE.
PROSITEPS01021. COPROGEN_OXIDASE. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameHEM6_MESSB
AccessionPrimary (citable) accession number: Q11GB4
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: August 22, 2006
Last modified: November 3, 2009
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents