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Reviewed, UniProtKB/Swiss-Prot Q11EH9 (XYLA_MESSB)

Last modified June 16, 2009. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Xylose isomerase
    EC=5.3.1.5
Gene names
Name: xylA
Ordered Locus Names: Meso_2820
OrganismMesorhizobium sp. (strain BNC1) [Complete proteome] [HAMAP]
Taxonomic identifier266779 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Mesorhizobium

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Protein attributes

Sequence length436 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. HAMAP MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity.

Subunit structure

Homotetramer By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the xylose isomerase family.

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Ontologies

Keywords
   Biological processCarbohydrate metabolism
Pentose shunt
Xylose metabolism
   Cellular componentCytoplasm
   LigandMagnesium
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processD-xylose metabolic process

Inferred from electronic annotation. Source: HAMAP

pentose-phosphate shunt

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionmagnesium ion binding

Inferred from electronic annotation. Source: HAMAP

xylose isomerase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 436436Xylose isomerase HAMAP MF_00455
PRO_1000026446

Sites

Active site1001 By similarity
Active site1031 By similarity
Metal binding2311Magnesium 1 By similarity
Metal binding2671Magnesium 1 By similarity
Metal binding2671Magnesium 2 By similarity
Metal binding2701Magnesium 2 By similarity
Metal binding2951Magnesium 1 By similarity
Metal binding3061Magnesium 2 By similarity
Metal binding3081Magnesium 2 By similarity
Metal binding3381Magnesium 1 By similarity

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Sequences

Sequence LengthMass (Da)Tools
Q11EH9-1 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 8222359A6A2DD1AD

FASTA43648,817
        10         20         30         40         50         60 
MSTGFFGNLQ PISYEGPQSD NPLAFRHYNP DEVVLGKRLE DHLRFAVCYW HTFVWPGGDP 

        70         80         90        100        110        120 
FGGQTFERPW FGDTMERARL KADVAFELFE ILGVPFFTFH DADVRPEGAS YSESVARLND 

       130        140        150        160        170        180 
IADYIAAKME KTGVRLLWGT ANLFSHRRFM AGAATNPDPD VFAYAAATVK ACIDVTKRLN 

       190        200        210        220        230        240 
GENYVLWGGR EGYETLLNTD LGRELDQLGR FLSMVVDYKH RIGFKGAILI EPKPQEPTKH 

       250        260        270        280        290        300 
QYDFDVGTVY GFLKRYGLED EVKVNIEQGH ALLAGHSFEH ELALAATLGI FGSIDMNRND 

       310        320        330        340        350        360 
YQSGWDTDQF PNNAPEAALA YYYILQAGGF TTGGTNFDAK LRRQSLDPED LVAAHIGGMD 

       370        380        390        400        410        420 
ICAQGLKAAA RMIEDKALSG PLEERYSGWN ATEAQAMLKG ERSLEAIAER VARENLDPKP 

       430 
RSGRQEKLEN IINRYV

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References

[1]"Complete sequence of chromosome of Mesorhizobium sp. BNC1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000390 Genomic DNA. Translation: ABG64196.1.
RefSeqYP_675361.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID4179915.
GenomeReviewsGene locus Meso_2820 in contig CP000390_GR.
KEGGmes:Meso_2820.
NMPDRfig|266779.1.peg.1352.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ11EH9.
OMAQ11EH9. QFLIEPK.

Enzyme and pathway databases

BioCycMSP266779:MESO_2820-MON.

Family and domain databases

HAMAPMF_00455.
[Tree]
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR012307. Xyl_isomerase-typ_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
IPR018115. Xylose_isomerase_AS.
[Graphical view]
Gene3DG3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit.
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameXYLA_MESSB
AccessionPrimary (citable) accession number: Q11EH9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: August 22, 2006
Last modified: June 16, 2009
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents