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Q11BH8 (TYPH_MESSB) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:Meso_3880
OrganismMesorhizobium sp. (strain BNC1) [Complete proteome] [HAMAP]
Taxonomic identifier266779 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeChelativorans

Protein attributes

Sequence length509 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 509509Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314702

Sequences

Sequence LengthMass (Da)Tools
Q11BH8 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 585D372C3D867E70

FASTA50953,390
        10         20         30         40         50         60 
MTALVSPAGP EQPSLRVRRL LLHTQHQPVV VMHTDCHVCR SEGLAARSQV LLTNGARQVH 

        70         80         90        100        110        120 
ATLFQVDGDA VLSHDEVGLS ETAWDLLGVA EGDEVRVSHP PALESLASVR RRIYGHRLDA 

       130        140        150        160        170        180 
QALSEIVRDV AAGRYTDVHL AAFLTASAAL PLDENETADL TGAMIAVGDR MEWDAPTVVD 

       190        200        210        220        230        240 
KHCVGGLPGN RTTPIVVAIV AANGLVMPKT SSRAITSPAG TADTMETLAP VDLDLATLRR 

       250        260        270        280        290        300 
VVEAEGGCIA WGGAVHLSPA DDIFVRVERE LDVDTEGQLI ASVLSKKISA GSTHVVIDIP 

       310        320        330        340        350        360 
VGPTAKVRGE DAASHLASRI TAVASRFGLA ATCVQTDGSQ PVGRGIGPAL EAFDVLAVLQ 

       370        380        390        400        410        420 
NASDAPDDLR RRAATLAGAA LEIGRKAGKG EGTALALETL ADGRAWKKFE AICEAQGGLR 

       430        440        450        460        470        480 
APPRAAHVHP LVAPRAGRVV HINNRKLSRL AKLAGAPESK AGGVHMDVRL GDEIDRGQPL 

       490        500 
LHVHAETTGE LAYALDYAAR AGDIVEIEA 

« Hide

References

[1]"Complete sequence of chromosome of Mesorhizobium sp. BNC1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BNC1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000390 Genomic DNA. Translation: ABG65247.1.
RefSeqYP_676412.1. NC_008254.1.

3D structure databases

ProteinModelPortalQ11BH8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266779.Meso_3880.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG65247; ABG65247; Meso_3880.
GeneID4181668.
KEGGmes:Meso_3880.
PATRIC21348140. VBICheSp72577_4670.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACHSEGFE.
OrthoDBEOG61ZTGG.
ProtClustDBPRK04350.

Enzyme and pathway databases

BioCycCSP266779:GI09-3943-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_MESSB
AccessionPrimary (citable) accession number: Q11BH8
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: August 22, 2006
Last modified: February 19, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families