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Protein

Phosphopentomutase

Gene

deoB

Organism
Chelativorans sp. (strain BNC1)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose.IEP:

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.IEP:
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.IEP:

Cofactori

Mn2+IEP:Note: Binds 1 or 2 manganese ions.IEP:

Pathwayi: 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II).IEP:
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Phosphopentomutase (deoB)
  2. no protein annotated in this organism
  3. Ribose 1,5-bisphosphate phosphokinase PhnN (phnN)
This subpathway is part of the pathway 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis, which is itself part of Metabolic intermediate biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II), the pathway 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis and in Metabolic intermediate biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi10ManganeseIEP:1
Metal bindingi307ManganeseIEP:1
Metal bindingi343ManganeseIEP:1
Metal bindingi344ManganeseIEP:1
Metal bindingi355ManganeseIEP:1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
LigandManganese, Metal-binding

Enzyme and pathway databases

UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseIEP: (EC:5.4.2.7IEP:)
Alternative name(s):
PhosphodeoxyribomutaseIEP:
Gene namesi
Name:deoBIEP:
Ordered Locus Names:Meso_4099
OrganismiChelativorans sp. (strain BNC1)
Taxonomic identifieri266779 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeChelativorans
Proteomesi
  • UP000001820 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002582941 – 409PhosphopentomutaseAdd BLAST409

Interactioni

Protein-protein interaction databases

STRINGi266779.Meso_4099.

Structurei

3D structure databases

ProteinModelPortaliQ11AV9.
SMRiQ11AV9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.IEP:

Phylogenomic databases

eggNOGiENOG4105CZG. Bacteria.
COG1015. LUCA.
HOGENOMiHOG000008159.
KOiK01839.
OMAiCHASGTE.
OrthoDBiPOG091H00WE.

Family and domain databases

CDDicd16009. PPM. 1 hit.
Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut. 1 hit.
InterProiView protein in InterPro
IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core_sf.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap_sf.
PANTHERiPTHR21110. PTHR21110. 1 hit.
PfamiView protein in Pfam
PF01676. Metalloenzyme. 1 hit.
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q11AV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARAFLFVLD SFGIGHAPDA ARFGDEGANT FGHIAGACAA GRADRAGLRT
60 70 80 90 100
GPLDLPHMQS LGLNAAAAIA AGREPERGFA STGFFGAAEE RSTGKDTPSG
110 120 130 140 150
HWEIAGVPVP FEWGYFPETT PSFPAELTGR LIREASLPGI LANCHASGTE
160 170 180 190 200
VIARLGEEHI RTGKPICYTS ADSVFQIAAH ETHFGLDRLY AVCETARRLV
210 220 230 240 250
DDYRIGRVIA RPFVGESAET FERTANRRDY AVPPPEPTLL DRVEAAGRRV
260 270 280 290 300
IGIGKIGDIF AHQGVTEVRK AAGNMALFDA ALGAMDDARE GDLVFANFVD
310 320 330 340 350
FDSLYGHRRD VAGYAAALEA FDRRLPEALG KLRAGDLLIL TADHGCDPTW
360 370 380 390 400
RGTDHTRECV PILGAGPGLA KGSIGRRRSY ADIGETIASH LALPAGRHGV

SFLNALQHA
Length:409
Mass (Da):43,607
Last modified:August 22, 2006 - v1
Checksum:i670D703841EEB5A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000390 Genomic DNA. Translation: ABG65466.1.
RefSeqiWP_011583407.1. NC_008254.1.

Genome annotation databases

EnsemblBacteriaiABG65466; ABG65466; Meso_4099.
KEGGimes:Meso_4099.

Similar proteinsi

Entry informationi

Entry nameiDEOB_CHESB
AccessioniPrimary (citable) accession number: Q11AV9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: August 22, 2006
Last modified: November 22, 2017
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families