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Q116P1 (DAPF_TRIEI) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase
Short name=DAP epimerase
EC=5.1.1.7
Gene names
Name:dapF
Ordered Locus Names:Tery_1173
OrganismTrichodesmium erythraeum (strain IMS101) [Complete proteome] [HAMAP]
Taxonomic identifier203124 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Oscillatoriales › Trichodesmium

Protein attributes

Sequence length278 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197

Subcellular location

Cytoplasm By similarity HAMAP MF_00197.

Sequence similarities

Belongs to the diaminopimelate epimerase family.

Ontologies

Keywords
   Biological processAmino-acid biosynthesis
Lysine biosynthesis
   Cellular componentCytoplasm
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processlysine biosynthetic process via diaminopimelate

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondiaminopimelate epimerase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 278278Diaminopimelate epimerase HAMAP MF_00197
PRO_1000011978

Sites

Active site751 By similarity
Active site2221 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q116P1 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 77B39B893B94FCCA

FASTA27830,279
        10         20         30         40         50         60 
MTKSFTKYHG LGNDFILIDN RHQLQPILTP EQAIELCDRN FGIGADGVIF ALPGVKQTDY 

        70         80         90        100        110        120 
TMRIFNSDGS EPEMCGNGIR CLAKFIAELE NNNKTKYNIH TGAGIIVPEL QGDGQVTVDM 

       130        140        150        160        170        180 
GQPRLLASEI PTTLANADDK VVDQLLEVGG KSWFVTCVSM GNPHCITFVE DVTAIDLAKI 

       190        200        210        220        230        240 
GPKFEHNPVF PERTNTEFIQ VISPKYVKMR VWERGAGATL ACGTGACASV VAGVLTQNNE 

       250        260        270 
RLVTVELPGG CLEIEWSTID QKIYMTGPAE KVFTGIIA

« Hide

References

[1]"Complete sequence of Trichodesmium erythraeum IMS101."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IMS101.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000393 Genomic DNA. Translation: ABG50533.1.
RefSeqYP_721006.1. NC_008312.1.

3D structure databases

ProteinModelPortalQ116P1.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ116P1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4244057.
GenomeReviewsGene locus Tery_1173 in contig CP000393_GR.
KEGGter:Tery_1173.
NMPDRfig|203124.1.peg.3495.
PATRIC23986041. VBITriEry99848_1459.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0253.
HOGENOMHBG399442.
OMAFMTGPAT.
PhylomeDBQ116P1.
ProtClustDBPRK00450.

Enzyme and pathway databases

BioCycTERY203124:TERY_1173-MONOMER.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDAPF_TRIEI
AccessionPrimary (citable) accession number: Q116P1
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: August 22, 2006
Last modified: January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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