Q113W5 (Q113W5_TRIEI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma 28 subunit EMBL ABG51209.1

Gene names

Ordered Locus Names:

Tery_1956

Organism

Trichodesmium erythraeum (strain IMS101) [Complete proteome] [HAMAP] EMBL ABG51209.1

Taxonomic identifier

203124 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Oscillatoriales › Trichodesmium

Protein attributes

Sequence length	410 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q113W5 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 68177639300A54B7	FASTA	410	47,571
	10 20 30 40 50 60 MITTSEIYPY TEDTLQSNNL QNECSEHLGQ TINELTIEDK KVDSSQINTN YSGRDSVRSY 70 80 90 100 110 120 LQEIGRVDLL QRDQEVSTAQ KVQRYVHLLE LRNKAAEQEQ EIQRYVEMIK IRDRLAARLG 130 140 150 160 170 180 HKPSFERWLK AGNLSMAELK EIIAVGKLRW AKLTGLNVKE LEQIQTEGIE ARHQMISTNL 190 200 210 220 230 240 RLVVSIAKKY QNRGVELLDL IQEGTLGLER AVEKFDPQRG YRFSTYAYWW IRQGITRAIA 250 260 270 280 290 300 TQSRTIRLPI HVSEKLNKIK KVQQKIFQEK GYTAKVEEIA RELKITAAQV REVLVKIPHS 310 320 330 340 350 360 VSLETKVGRD RDTELGELLE TKDASPEEML IRESLVQALK ELLLDLTQRE RYVITMRYGL 370 380 390 400 410 EDGRACSLSE IASALKLSRE RVRQIEVKAL HKLRQPKFRN QIQDYLESLN

References

[1]

"Complete sequence of Trichodesmium erythraeum IMS101." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P. , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IMS101.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000393 Genomic DNA. Translation: ABG51209.1.
RefSeq	YP_721682.1. NC_008312.1.
3D structure databases
ProteinModelPortal	Q113W5.
SMR	Q113W5. Positions 151-242.
ModBase	Search...
Protein-protein interaction databases
STRING	Q113W5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4244380.
GenomeReviews	Gene locus Tery_1956 in contig CP000393_GR.
KEGG	ter:Tery_1956.
NMPDR	fig|203124.1.peg.807.
PATRIC	23988123. VBITriEry99848_2497.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q113W5.
Enzyme and pathway databases
BioCyc	TERY203124:TERY_1956-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q113W5_TRIEI

Accession

Primary (citable) accession number: Q113W5

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)