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Reviewed, UniProtKB/Swiss-Prot Q11181 (YPC4_CAEEL)

Last modified December 15, 2009. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Uncharacterized protein C05D10.4
Gene names
ORF Names: C05D10.4
OrganismCaenorhabditis elegans [Complete proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

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Protein attributes

Sequence length597 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Sequence similarities

Contains 1 SAM (sterile alpha motif) domain.

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Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionprotein binding

Inferred from physical interaction. Source: IntAct

Complete GO annotation...

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Binary interactions

With

Entry

#Exp.

IntAct

Notes

abl-1P039492EBI-2316016,EBI-2315883

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Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform b (identifier: Q11181-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: No experimental confirmation available.
Isoform a (identifier: Q11181-2)

The sequence of this isoform differs from the canonical sequence as follows:
     13-44: Missing.
Note: No experimental confirmation available.
Isoform c (identifier: Q11181-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1-179: Missing.
Note: No experimental confirmation available.

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 597597Uncharacterized protein C05D10.4
PRO_0000065146

Regions

Domain402 – 46564SAM
Compositional bias280 – 31233Ser-rich

Natural variations

Alternative sequence1 – 179179Missing in isoform c.
VSP_007785
Alternative sequence13 – 4432Missing in isoform a.
VSP_007786

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Sequences

Sequence LengthMass (Da)Tools
Isoform b [UniParc].

Last modified July 19, 2003. Version 2.
Checksum: 5860EFD1FCB21244

FASTA59767,535
        10         20         30         40         50         60 
MTARPYEPPP DYFCTHLLKN HQIEWKKPVK AKASPIHLFV FLREPMIEQR WPTTVRNSSI 

        70         80         90        100        110        120 
HPHVSSAHPS YRSHSIDAAV NRSSSACFHS PHRPSFPSRG LQKYDYPICG VSPSRHLSYN 

       130        140        150        160        170        180 
HFYNQSAAEI EEMLRTRQFP EIAGIYGNDE QPSLRRFTRY NQSINSRAVP PPAPPNPPKM 

       190        200        210        220        230        240 
EKHMSHDTSG RGSIFSKSSK KPLFFMGNWT FRDRNKSARP SISEALREER PQSMNLSDIK 

       250        260        270        280        290        300 
PATRSKSGEV LGPRNHIHIE SITEFPRNIE TRVPVKIERS SMVRRKPSNM GGSTEVSITS 

       310        320        330        340        350        360 
SSPSPSSSSS TSTGEFKTTI TVDDDHQPTA VMRPKKESDT RGTLNNNRYS FQSCVQLRKS 

       370        380        390        400        410        420 
CPDLDSTAMS NMEQHRVSKK RTRRAKEKMS QAAWKRKTVK EWSLDDVLLW LQSAQMDDVA 

       430        440        450        460        470        480 
GLLIGYDLRG EDLLQWNDQT LAQLGVSNPE IRKKLLDDLS KIIENGPEPA QEDIRNNHRT 

       490        500        510        520        530        540 
LFDIVKQTSY DQVLAVETPL TTRDITVTHG RLGCLQITKV NGANLPLKEH DCLLEINERA 

       550        560        570        580        590 
GEQFKSALML TKLISDSNGA AIRFVVLRRK TNLVVEESQQ KESSSSGISS SPQTPTE

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Isoform a.

Checksum: BFA443E23FCD92C2
Show »

FASTA56563,694
Isoform c.

Checksum: 1D1969FCACE898BF
Show »

FASTA41846,941

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING.
Strain: Bristol N2.

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Cross-references

Sequence databases

U13645 Genomic DNA. Translation: AAM15544.1.
U13645 Genomic DNA. Translation: AAM15545.1.
U13645 Genomic DNA. Translation: AAM15546.1.
PIRC88474.
RefSeqNP_498323.2.
NP_498324.2.
NP_741170.1.
UniGeneCel.5024

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActQ11181. 4 interactions.

Proteomic databases

PRIDEQ11181.

Genome annotation databases

EnsemblC05D10.4b; C05D10.4b; C05D10.4; Caenorhabditis elegans. [Genome view]
GeneID175860.
KEGGcel:C05D10.4.
NMPDRfig|6239.3.peg.10047.
UCSCC05D10.4b. c. elegans.

Organism-specific databases

CTD175860.
WormBaseWBGene00015480. C05D10.4.
WormPepC05D10.4a. CE30423. [WorfDB]
C05D10.4b. CE30424. [WorfDB]
C05D10.4c. CE30425. [WorfDB]

Phylogenomic databases

HOGENOMHBG382304.
InParanoidQ11181.
OMAFKSALML.

Gene expression databases

ArrayExpressQ11181.

Family and domain databases

InterProIPR001660. SAM.
IPR011510. SAM_2.
IPR010993. SAM_homology.
[Graphical view]
PfamPF07647. SAM_2. 1 hit.
[Graphical view]
SMARTSM00454. SAM. 1 hit.
[Graphical view]
PROSITEPS50105. SAM_DOMAIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio890016.

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Entry information

Entry nameYPC4_CAEEL
AccessionPrimary (citable) accession number: Q11181
Secondary accession number(s): Q8T3F3, Q8T3F4, Q8T3F5
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 19, 2003
Last modified: December 15, 2009
This is version 57 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectCaenorhabditis annotation project

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Relevant documents

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormPep

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents