Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q11181

- YPC4_CAEEL

UniProt

Q11181 - YPC4_CAEEL

Protein

Uncharacterized protein C05D10.4

Gene

C05D10.4

Organism
Caenorhabditis elegans
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 87 (01 Oct 2014)
      Sequence version 2 (19 Jul 2003)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. protein binding Source: IntAct

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein C05D10.4
    Gene namesi
    ORF Names:C05D10.4
    OrganismiCaenorhabditis elegans
    Taxonomic identifieri6239 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
    ProteomesiUP000001940: Chromosome III

    Organism-specific databases

    WormBaseiC05D10.4a; CE30423; WBGene00015480.
    C05D10.4b; CE30424; WBGene00015480.
    C05D10.4c; CE30425; WBGene00015480.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 597597Uncharacterized protein C05D10.4PRO_0000065146Add
    BLAST

    Proteomic databases

    PRIDEiQ11181.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    abl-1P039496EBI-2316016,EBI-2315883

    Protein-protein interaction databases

    BioGridi41081. 1 interaction.
    IntActiQ11181. 8 interactions.

    Structurei

    3D structure databases

    ProteinModelPortaliQ11181.
    SMRiQ11181. Positions 397-465.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini402 – 46564SAMPROSITE-ProRule annotationAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi280 – 31233Ser-richAdd
    BLAST

    Sequence similaritiesi

    Contains 1 SAM (sterile alpha motif) domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG321295.
    HOGENOMiHOG000022028.
    InParanoidiQ11181.
    OMAiFKSALML.
    OrthoDBiEOG7X6M04.

    Family and domain databases

    Gene3Di1.10.150.50. 1 hit.
    InterProiIPR001660. SAM.
    IPR013761. SAM/pointed.
    IPR011510. SAM_2.
    [Graphical view]
    PfamiPF07647. SAM_2. 1 hit.
    [Graphical view]
    SMARTiSM00454. SAM. 1 hit.
    [Graphical view]
    SUPFAMiSSF47769. SSF47769. 1 hit.
    PROSITEiPS50105. SAM_DOMAIN. 1 hit.
    [Graphical view]

    Sequences (3)i

    Sequence statusi: Complete.

    This entry describes 3 isoformsi produced by alternative splicing. Align

    Isoform b (identifier: Q11181-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MTARPYEPPP DYFCTHLLKN HQIEWKKPVK AKASPIHLFV FLREPMIEQR    50
    WPTTVRNSSI HPHVSSAHPS YRSHSIDAAV NRSSSACFHS PHRPSFPSRG 100
    LQKYDYPICG VSPSRHLSYN HFYNQSAAEI EEMLRTRQFP EIAGIYGNDE 150
    QPSLRRFTRY NQSINSRAVP PPAPPNPPKM EKHMSHDTSG RGSIFSKSSK 200
    KPLFFMGNWT FRDRNKSARP SISEALREER PQSMNLSDIK PATRSKSGEV 250
    LGPRNHIHIE SITEFPRNIE TRVPVKIERS SMVRRKPSNM GGSTEVSITS 300
    SSPSPSSSSS TSTGEFKTTI TVDDDHQPTA VMRPKKESDT RGTLNNNRYS 350
    FQSCVQLRKS CPDLDSTAMS NMEQHRVSKK RTRRAKEKMS QAAWKRKTVK 400
    EWSLDDVLLW LQSAQMDDVA GLLIGYDLRG EDLLQWNDQT LAQLGVSNPE 450
    IRKKLLDDLS KIIENGPEPA QEDIRNNHRT LFDIVKQTSY DQVLAVETPL 500
    TTRDITVTHG RLGCLQITKV NGANLPLKEH DCLLEINERA GEQFKSALML 550
    TKLISDSNGA AIRFVVLRRK TNLVVEESQQ KESSSSGISS SPQTPTE 597

    Note: No experimental confirmation available.

    Length:597
    Mass (Da):67,535
    Last modified:July 19, 2003 - v2
    Checksum:i5860EFD1FCB21244
    GO
    Isoform a (identifier: Q11181-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         13-44: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:565
    Mass (Da):63,694
    Checksum:iBFA443E23FCD92C2
    GO
    Isoform c (identifier: Q11181-3) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-179: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:418
    Mass (Da):46,941
    Checksum:i1D1969FCACE898BF
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 179179Missing in isoform c. CuratedVSP_007785Add
    BLAST
    Alternative sequencei13 – 4432Missing in isoform a. CuratedVSP_007786Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FO080362 Genomic DNA. Translation: CCD63177.1.
    FO080362 Genomic DNA. Translation: CCD63178.1.
    FO080362 Genomic DNA. Translation: CCD63179.1.
    PIRiC88474.
    RefSeqiNP_498323.2. NM_065922.4. [Q11181-2]
    NP_498324.2. NM_065923.4. [Q11181-1]
    NP_741170.1. NM_171149.3. [Q11181-3]
    UniGeneiCel.5024.

    Genome annotation databases

    EnsemblMetazoaiC05D10.4b; C05D10.4b; WBGene00015480. [Q11181-1]
    GeneIDi175860.
    KEGGicel:CELE_C05D10.4.
    UCSCiC05D10.4b. c. elegans. [Q11181-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FO080362 Genomic DNA. Translation: CCD63177.1 .
    FO080362 Genomic DNA. Translation: CCD63178.1 .
    FO080362 Genomic DNA. Translation: CCD63179.1 .
    PIRi C88474.
    RefSeqi NP_498323.2. NM_065922.4. [Q11181-2 ]
    NP_498324.2. NM_065923.4. [Q11181-1 ]
    NP_741170.1. NM_171149.3. [Q11181-3 ]
    UniGenei Cel.5024.

    3D structure databases

    ProteinModelPortali Q11181.
    SMRi Q11181. Positions 397-465.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 41081. 1 interaction.
    IntActi Q11181. 8 interactions.

    Proteomic databases

    PRIDEi Q11181.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai C05D10.4b ; C05D10.4b ; WBGene00015480 . [Q11181-1 ]
    GeneIDi 175860.
    KEGGi cel:CELE_C05D10.4.
    UCSCi C05D10.4b. c. elegans. [Q11181-1 ]

    Organism-specific databases

    CTDi 175860.
    WormBasei C05D10.4a ; CE30423 ; WBGene00015480 .
    C05D10.4b ; CE30424 ; WBGene00015480 .
    C05D10.4c ; CE30425 ; WBGene00015480 .

    Phylogenomic databases

    eggNOGi NOG321295.
    HOGENOMi HOG000022028.
    InParanoidi Q11181.
    OMAi FKSALML.
    OrthoDBi EOG7X6M04.

    Miscellaneous databases

    NextBioi 890016.

    Family and domain databases

    Gene3Di 1.10.150.50. 1 hit.
    InterProi IPR001660. SAM.
    IPR013761. SAM/pointed.
    IPR011510. SAM_2.
    [Graphical view ]
    Pfami PF07647. SAM_2. 1 hit.
    [Graphical view ]
    SMARTi SM00454. SAM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47769. SSF47769. 1 hit.
    PROSITEi PS50105. SAM_DOMAIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
      The C. elegans sequencing consortium
      Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING.
      Strain: Bristol N2.

    Entry informationi

    Entry nameiYPC4_CAEEL
    AccessioniPrimary (citable) accession number: Q11181
    Secondary accession number(s): Q8T3F3, Q8T3F4, Q8T3F5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: July 19, 2003
    Last modified: October 1, 2014
    This is version 87 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programCaenorhabditis annotation project

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Caenorhabditis elegans
      Caenorhabditis elegans: entries, gene names and cross-references to WormBase
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3