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Q11181 (YPC4_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein C05D10.4
Gene names
ORF Names:C05D10.4
OrganismCaenorhabditis elegans [Reference proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length597 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 SAM (sterile alpha motif) domain.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Binary interactions

With

Entry

#Exp.

IntAct

Notes

abl-1P039496EBI-2316016,EBI-2315883

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform b (identifier: Q11181-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: No experimental confirmation available.
Isoform a (identifier: Q11181-2)

The sequence of this isoform differs from the canonical sequence as follows:
     13-44: Missing.
Note: No experimental confirmation available.
Isoform c (identifier: Q11181-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1-179: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 597597Uncharacterized protein C05D10.4
PRO_0000065146

Regions

Domain402 – 46564SAM
Compositional bias280 – 31233Ser-rich

Natural variations

Alternative sequence1 – 179179Missing in isoform c.
VSP_007785
Alternative sequence13 – 4432Missing in isoform a.
VSP_007786

Sequences

Sequence LengthMass (Da)Tools
Isoform b [UniParc].

Last modified July 19, 2003. Version 2.
Checksum: 5860EFD1FCB21244

FASTA59767,535
        10         20         30         40         50         60 
MTARPYEPPP DYFCTHLLKN HQIEWKKPVK AKASPIHLFV FLREPMIEQR WPTTVRNSSI 

        70         80         90        100        110        120 
HPHVSSAHPS YRSHSIDAAV NRSSSACFHS PHRPSFPSRG LQKYDYPICG VSPSRHLSYN 

       130        140        150        160        170        180 
HFYNQSAAEI EEMLRTRQFP EIAGIYGNDE QPSLRRFTRY NQSINSRAVP PPAPPNPPKM 

       190        200        210        220        230        240 
EKHMSHDTSG RGSIFSKSSK KPLFFMGNWT FRDRNKSARP SISEALREER PQSMNLSDIK 

       250        260        270        280        290        300 
PATRSKSGEV LGPRNHIHIE SITEFPRNIE TRVPVKIERS SMVRRKPSNM GGSTEVSITS 

       310        320        330        340        350        360 
SSPSPSSSSS TSTGEFKTTI TVDDDHQPTA VMRPKKESDT RGTLNNNRYS FQSCVQLRKS 

       370        380        390        400        410        420 
CPDLDSTAMS NMEQHRVSKK RTRRAKEKMS QAAWKRKTVK EWSLDDVLLW LQSAQMDDVA 

       430        440        450        460        470        480 
GLLIGYDLRG EDLLQWNDQT LAQLGVSNPE IRKKLLDDLS KIIENGPEPA QEDIRNNHRT 

       490        500        510        520        530        540 
LFDIVKQTSY DQVLAVETPL TTRDITVTHG RLGCLQITKV NGANLPLKEH DCLLEINERA 

       550        560        570        580        590 
GEQFKSALML TKLISDSNGA AIRFVVLRRK TNLVVEESQQ KESSSSGISS SPQTPTE 

« Hide

Isoform a [UniParc].

Checksum: BFA443E23FCD92C2
Show »

FASTA56563,694
Isoform c [UniParc].

Checksum: 1D1969FCACE898BF
Show »

FASTA41846,941

References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING.
Strain: Bristol N2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FO080362 Genomic DNA. Translation: CCD63177.1.
FO080362 Genomic DNA. Translation: CCD63178.1.
FO080362 Genomic DNA. Translation: CCD63179.1.
PIRC88474.
RefSeqNP_498323.2. NM_065922.4.
NP_498324.2. NM_065923.4.
NP_741170.1. NM_171149.3.
UniGeneCel.5024.

3D structure databases

ProteinModelPortalQ11181.
SMRQ11181. Positions 397-465.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid41081. 1 interaction.
IntActQ11181. 8 interactions.

Proteomic databases

PRIDEQ11181.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaC05D10.4b; C05D10.4b; C05D10.4. [Q11181-1]
GeneID175860.
KEGGcel:CELE_C05D10.4.
UCSCC05D10.4b. c. elegans. [Q11181-1]

Organism-specific databases

CTD175860.
WormBaseC05D10.4a; CE30423; WBGene00015480.
C05D10.4b; CE30424; WBGene00015480.
C05D10.4c; CE30425; WBGene00015480.

Phylogenomic databases

eggNOGNOG321295.
HOGENOMHOG000022028.
InParanoidQ11181.
OMAFKSALML.
OrthoDBEOG7X6M04.

Family and domain databases

Gene3D1.10.150.50. 1 hit.
InterProIPR001660. SAM.
IPR013761. SAM/pointed.
IPR011510. SAM_2.
[Graphical view]
PfamPF07647. SAM_2. 1 hit.
[Graphical view]
SMARTSM00454. SAM. 1 hit.
[Graphical view]
SUPFAMSSF47769. SSF47769. 1 hit.
PROSITEPS50105. SAM_DOMAIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio890016.

Entry information

Entry nameYPC4_CAEEL
AccessionPrimary (citable) accession number: Q11181
Secondary accession number(s): Q8T3F3, Q8T3F4, Q8T3F5
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 19, 2003
Last modified: April 16, 2014
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

SIMILARITY comments

Index of protein domains and families

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormBase