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Q10UU4 (Q10UU4_TRIEI) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Protein translocase subunit SecD HAMAP-Rule MF_01463
Gene names
Name:secD HAMAP-Rule MF_01463
Ordered Locus Names:Tery_5077 EMBL ABG53980.1
OrganismTrichodesmium erythraeum (strain IMS101) [Complete proteome] [HAMAP] EMBL ABG53980.1
Taxonomic identifier203124 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeOscillatorialesTrichodesmium

Protein attributes

Sequence length461 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA By similarity. HAMAP-Rule MF_01463

Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells By similarity. HAMAP-Rule MF_01463

Subunit structure

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved By similarity. HAMAP-Rule MF_01463

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_01463.

Sequence similarities

Belongs to the SecD/SecF family. SecD subfamily. HAMAP-Rule MF_01463

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 Potential EMBL ABG53980.1
Chain25 – 461437 Potential EMBL ABG53980.1
PRO_5000127144

Regions

Transmembrane7 – 2721Helical; By similarity HAMAP-Rule MF_01463
Transmembrane299 – 31921Helical; By similarity HAMAP-Rule MF_01463
Transmembrane322 – 34221Helical; By similarity HAMAP-Rule MF_01463
Transmembrane345 – 36521Helical; By similarity HAMAP-Rule MF_01463
Transmembrane386 – 40823Helical; By similarity HAMAP-Rule MF_01463
Transmembrane418 – 44023Helical; By similarity HAMAP-Rule MF_01463

Sequences

Sequence LengthMass (Da)Tools
Q10UU4 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 4DF4B03242DFCC12

FASTA46150,044
        10         20         30         40         50         60 
MRRQNSYIAL ILVLVIASVT VLSQIPIRLG LDLRGGSQLT IQLQTSEEIP TIDERVMEGV 

        70         80         90        100        110        120 
LKIVENRVNA LGVSESVVQS LGQDQILVQL PGVNDPEQAE RVLGGTAQLD FREQLQSTEQ 

       130        140        150        160        170        180 
QLAIEYQVQR QLLVEQELLK NSEDQEAIEK NLESIEKTNQ AIAQLFKEAI IKGQDLRDAL 

       190        200        210        220        230        240 
AEPEAPGSNN WNVALRFTSE GGQKFAELTK NLAGTGRSIG IFLDDKLLSA PTVSVEFAET 

       250        260        270        280        290        300 
GITGGSAVIQ GTFTPQQAND LAVQLRGGAL PVSVEIVENR TVGATLGRDS IQRSVYAGIG 

       310        320        330        340        350        360 
GLILVLIFMV LYYRLPGVIA DVALVIYALF TIASFSILGV TLTLPGIAGF ILSIGMAVDA 

       370        380        390        400        410        420 
NVLIFERTRE ELRAGKTLYR SVESGFYRAF SSILDGNVTT LIACVALFWL GTGLVKGFAL 

       430        440        450        460 
TLGIGVAISM FTALTCSRTL MFWTIGFSQF RKPELFCPEL K 

« Hide

References

[1]"Complete sequence of Trichodesmium erythraeum IMS101."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IMS101 EMBL ABG53980.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000393 Genomic DNA. Translation: ABG53980.1.
RefSeqYP_724453.1. NC_008312.1.

3D structure databases

ProteinModelPortalQ10UU4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING203124.Tery_5077.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG53980; ABG53980; Tery_5077.
GeneID4246732.
KEGGter:Tery_5077.
PATRIC23996200. VBITriEry99848_6501.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0342.
HOGENOMHOG000018636.
KOK03072.
OMAAKITKEN.
OrthoDBEOG6N0HJT.
ProtClustDBPRK05812.

Enzyme and pathway databases

BioCycTERY203124:GJDR-5125-MONOMER.

Family and domain databases

HAMAPMF_01463_B. SecD_B.
InterProIPR001036. Acrflvin-R.
IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view]
PfamPF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSPR00702. ACRIFLAVINRP.
TIGRFAMsTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ10UU4_TRIEI
AccessionPrimary (citable) accession number: Q10UU4
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: February 19, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)