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Q10UU4

- Q10UU4_TRIEI

UniProt

Q10UU4 - Q10UU4_TRIEI

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Protein

Protein translocase subunit SecD

Gene

secD

Organism
Trichodesmium erythraeum (strain IMS101)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.UniRule annotation
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells.UniRule annotation

GO - Molecular functioni

  1. P-P-bond-hydrolysis-driven protein transmembrane transporter activity Source: InterPro

GO - Biological processi

  1. intracellular protein transmembrane transport Source: UniProtKB-HAMAP
  2. protein targeting Source: UniProtKB-HAMAP
  3. protein transport by the Sec complex Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Protein transport, TranslocationUniRule annotationSAAS annotation, Transport

Enzyme and pathway databases

BioCyciTERY203124:GJDR-5125-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein translocase subunit SecDUniRule annotation
Gene namesi
Name:secDUniRule annotation
Ordered Locus Names:Tery_5077Imported
OrganismiTrichodesmium erythraeum (strain IMS101)Imported
Taxonomic identifieri203124 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeOscillatorialesTrichodesmium
ProteomesiUP000008878: Chromosome

Subcellular locationi

Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. intracellular Source: GOC
  3. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membraneUniRule annotation, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424 PotentialImportedAdd
BLAST
Chaini25 – 461437 PotentialImportedPRO_5000127144Add
BLAST

Interactioni

Subunit structurei

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.UniRule annotation

Protein-protein interaction databases

STRINGi203124.Tery_5077.

Structurei

3D structure databases

ProteinModelPortaliQ10UU4.
ModBaseiSearch...
MobiDBiSearch...

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2721HelicalUniRule annotationAdd
BLAST
Transmembranei299 – 31921HelicalUniRule annotationAdd
BLAST
Transmembranei322 – 34221HelicalUniRule annotationAdd
BLAST
Transmembranei345 – 36521HelicalUniRule annotationAdd
BLAST
Transmembranei386 – 40823HelicalUniRule annotationAdd
BLAST
Transmembranei418 – 44023HelicalUniRule annotationAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the SecD/SecF family. SecD subfamily.UniRule annotation

Keywords - Domaini

SignalImported, Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiCOG0342.
HOGENOMiHOG000018636.
KOiK03072.
OMAiDAIYRIM.
OrthoDBiEOG6N0HJT.

Family and domain databases

HAMAPiMF_01463_B. SecD_B.
InterProiIPR001036. Acrflvin-R.
IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view]
PfamiPF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSiPR00702. ACRIFLAVINRP.
TIGRFAMsiTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q10UU4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRRQNSYIAL ILVLVIASVT VLSQIPIRLG LDLRGGSQLT IQLQTSEEIP
60 70 80 90 100
TIDERVMEGV LKIVENRVNA LGVSESVVQS LGQDQILVQL PGVNDPEQAE
110 120 130 140 150
RVLGGTAQLD FREQLQSTEQ QLAIEYQVQR QLLVEQELLK NSEDQEAIEK
160 170 180 190 200
NLESIEKTNQ AIAQLFKEAI IKGQDLRDAL AEPEAPGSNN WNVALRFTSE
210 220 230 240 250
GGQKFAELTK NLAGTGRSIG IFLDDKLLSA PTVSVEFAET GITGGSAVIQ
260 270 280 290 300
GTFTPQQAND LAVQLRGGAL PVSVEIVENR TVGATLGRDS IQRSVYAGIG
310 320 330 340 350
GLILVLIFMV LYYRLPGVIA DVALVIYALF TIASFSILGV TLTLPGIAGF
360 370 380 390 400
ILSIGMAVDA NVLIFERTRE ELRAGKTLYR SVESGFYRAF SSILDGNVTT
410 420 430 440 450
LIACVALFWL GTGLVKGFAL TLGIGVAISM FTALTCSRTL MFWTIGFSQF
460
RKPELFCPEL K
Length:461
Mass (Da):50,044
Last modified:August 22, 2006 - v1
Checksum:i4DF4B03242DFCC12
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000393 Genomic DNA. Translation: ABG53980.1.
RefSeqiWP_011614273.1. NC_008312.1.
YP_724453.1. NC_008312.1.

Genome annotation databases

EnsemblBacteriaiABG53980; ABG53980; Tery_5077.
GeneIDi4246732.
KEGGiter:Tery_5077.
PATRICi23996200. VBITriEry99848_6501.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000393 Genomic DNA. Translation: ABG53980.1 .
RefSeqi WP_011614273.1. NC_008312.1.
YP_724453.1. NC_008312.1.

3D structure databases

ProteinModelPortali Q10UU4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 203124.Tery_5077.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG53980 ; ABG53980 ; Tery_5077 .
GeneIDi 4246732.
KEGGi ter:Tery_5077.
PATRICi 23996200. VBITriEry99848_6501.

Phylogenomic databases

eggNOGi COG0342.
HOGENOMi HOG000018636.
KOi K03072.
OMAi DAIYRIM.
OrthoDBi EOG6N0HJT.

Enzyme and pathway databases

BioCyci TERY203124:GJDR-5125-MONOMER.

Family and domain databases

HAMAPi MF_01463_B. SecD_B.
InterProi IPR001036. Acrflvin-R.
IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view ]
Pfami PF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view ]
PRINTSi PR00702. ACRIFLAVINRP.
TIGRFAMsi TIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IMS101Imported.

Entry informationi

Entry nameiQ10UU4_TRIEI
AccessioniPrimary (citable) accession number: Q10UU4
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: October 29, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3