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Q10RB4

- BGAL5_ORYSJ

UniProt

Q10RB4 - BGAL5_ORYSJ

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Protein

Beta-galactosidase 5

Gene
Os03g0165400, LOC_Os03g06940, OJ1123F12.1
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei183 – 1831Proton donor Reviewed prediction
Active sitei252 – 2521Nucleophile Reviewed prediction

GO - Molecular functioni

  1. beta-galactosidase activity Source: UniProtKB-EC
  2. carbohydrate binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BRENDAi3.2.1.23. 4460.

Protein family/group databases

CAZyiGH35. Glycoside Hydrolase Family 35.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-galactosidase 5 (EC:3.2.1.23)
Short name:
Lactase 5
Gene namesi
Ordered Locus Names:Os03g0165400, LOC_Os03g06940
ORF Names:OJ1123F12.1
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 3

Organism-specific databases

GrameneiQ10RB4.

Subcellular locationi

Secretedextracellular spaceapoplast Reviewed prediction

GO - Cellular componenti

  1. apoplast Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 Reviewed predictionAdd
BLAST
Chaini26 – 841816Beta-galactosidase 5PRO_0000294157Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi392 – 3921N-linked (GlcNAc...) Reviewed prediction
Glycosylationi461 – 4611N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiQ10RB4.

Structurei

3D structure databases

ProteinModelPortaliQ10RB4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini752 – 83887SUEL-type lectinAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1874.
HOGENOMiHOG000239919.
OMAiTYDKKAI.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view]
PANTHERiPTHR23421. PTHR23421. 1 hit.
PfamiPF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSiPR00742. GLHYDRLASE35.
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q10RB4-1 [UniParc]FASTAAdd to Basket

« Hide

MGRGCLAALL GGAVAVAVLV AVVHCAVTYD KKAVLVDGQR RILFSGSIHY    50
PRSTPEMWDG LIEKAKDGGL DVIQTYVFWN GHEPTPGNYN FEGRYDLVRF 100
IKTVQKAGMF VHLRIGPYIC GEWNFGGFPV WLKYVPGISF RTDNEPFKNA 150
MQGFTEKIVG MMKSENLFAS QGGPIILSQI ENEYGPEGKE FGAAGKAYIN 200
WAAKMAVGLD TGVPWVMCKE DDAPDPVINA CNGFYCDTFS PNKPYKPTMW 250
TEAWSGWFTE FGGTIRQRPV EDLAFGVARF VQKGGSFINY YMYHGGTNFG 300
RTAGGPFITT SYDYDAPLDE YGLAREPKFG HLKELHRAVK LCEQPLVSAD 350
PTVTTLGSMQ EAHVFRSSSG CAAFLANYNS NSYAKVIFNN ENYSLPPWSI 400
SILPDCKNVV FNTATVGVQT NQMQMWADGA SSMMWEKYDE EVDSLAAAPL 450
LTSTGLLEQL NVTRDTSDYL WYITSVEVDP SEKFLQGGTP LSLTVQSAGH 500
ALHVFINGQL QGSAYGTRED RKISYSGNAN LRAGTNKVAL LSVACGLPNV 550
GVHYETWNTG VVGPVVIHGL DEGSRDLTWQ TWSYQVGLKG EQMNLNSLEG 600
SGSVEWMQGS LVAQNQQPLA WYRAYFDTPS GDEPLALDMG SMGKGQIWIN 650
GQSIGRYWTA YAEGDCKGCH YTGSYRAPKC QAGCGQPTQR WYHVPRSWLQ 700
PTRNLLVVFE ELGGDSSKIA LAKRTVSGVC ADVSEYHPNI KNWQIESYGE 750
PEFHTAKVHL KCAPGQTISA IKFASFGTPL GTCGTFQQGE CHSINSNSVL 800
EKKCIGLQRC VVAISPSNFG GDPCPEVMKR VAVEAVCSTA A 841
Length:841
Mass (Da):92,172
Last modified:August 22, 2006 - v1
Checksum:i2D35B96E6CB7C250
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti475 – 4751S → R in AAM22973. 1 Publication
Sequence conflicti475 – 4751S → R in AAM34271. 1 Publication
Sequence conflicti585 – 5851Q → QFQ in AAM22973. 1 Publication
Sequence conflicti585 – 5851Q → QFQ in AAM34271. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF499737 mRNA. Translation: AAM22973.1.
AF508799 mRNA. Translation: AAM34271.1.
DP000009 Genomic DNA. Translation: ABF94149.1.
AP008209 Genomic DNA. Translation: BAF10982.1.
AK102192 mRNA. No translation available.
RefSeqiNP_001049068.1. NM_001055603.1.
UniGeneiOs.13559.

Genome annotation databases

EnsemblPlantsiOS03T0165400-01; OS03T0165400-01; OS03G0165400.
GeneIDi4331730.
KEGGiosa:4331730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF499737 mRNA. Translation: AAM22973.1 .
AF508799 mRNA. Translation: AAM34271.1 .
DP000009 Genomic DNA. Translation: ABF94149.1 .
AP008209 Genomic DNA. Translation: BAF10982.1 .
AK102192 mRNA. No translation available.
RefSeqi NP_001049068.1. NM_001055603.1.
UniGenei Os.13559.

3D structure databases

ProteinModelPortali Q10RB4.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH35. Glycoside Hydrolase Family 35.

Proteomic databases

PRIDEi Q10RB4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS03T0165400-01 ; OS03T0165400-01 ; OS03G0165400 .
GeneIDi 4331730.
KEGGi osa:4331730.

Organism-specific databases

Gramenei Q10RB4.

Phylogenomic databases

eggNOGi COG1874.
HOGENOMi HOG000239919.
OMAi TYDKKAI.

Enzyme and pathway databases

BRENDAi 3.2.1.23. 4460.

Family and domain databases

Gene3Di 2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view ]
PANTHERi PTHR23421. PTHR23421. 1 hit.
Pfami PF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view ]
PRINTSi PR00742. GLHYDRLASE35.
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and expression of beta-galactosidase from rice."
    Chantarangsee M., Mizuno K., Fujimura T., Ketudat-Cairns J.R.
    Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Nipponbare.
    Tissue: Seed.
  2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiBGAL5_ORYSJ
AccessioniPrimary (citable) accession number: Q10RB4
Secondary accession number(s): Q8L3P5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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