Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q10RB4

- BGAL5_ORYSJ

UniProt

Q10RB4 - BGAL5_ORYSJ

Protein

Beta-galactosidase 5

Gene

Os03g0165400

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei183 – 1831Proton donorSequence Analysis
    Active sitei252 – 2521NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: UniProtKB-EC
    2. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Enzyme and pathway databases

    BRENDAi3.2.1.23. 4460.

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 5 (EC:3.2.1.23)
    Short name:
    Lactase 5
    Gene namesi
    Ordered Locus Names:Os03g0165400, LOC_Os03g06940
    ORF Names:OJ1123F12.1
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ10RB4.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525Sequence AnalysisAdd
    BLAST
    Chaini26 – 841816Beta-galactosidase 5PRO_0000294157Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi392 – 3921N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi461 – 4611N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ10RB4.

    Structurei

    3D structure databases

    ProteinModelPortaliQ10RB4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini752 – 83887SUEL-type lectinPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated
    Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.
    HOGENOMiHOG000239919.
    OMAiTYDKKAI.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q10RB4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRGCLAALL GGAVAVAVLV AVVHCAVTYD KKAVLVDGQR RILFSGSIHY    50
    PRSTPEMWDG LIEKAKDGGL DVIQTYVFWN GHEPTPGNYN FEGRYDLVRF 100
    IKTVQKAGMF VHLRIGPYIC GEWNFGGFPV WLKYVPGISF RTDNEPFKNA 150
    MQGFTEKIVG MMKSENLFAS QGGPIILSQI ENEYGPEGKE FGAAGKAYIN 200
    WAAKMAVGLD TGVPWVMCKE DDAPDPVINA CNGFYCDTFS PNKPYKPTMW 250
    TEAWSGWFTE FGGTIRQRPV EDLAFGVARF VQKGGSFINY YMYHGGTNFG 300
    RTAGGPFITT SYDYDAPLDE YGLAREPKFG HLKELHRAVK LCEQPLVSAD 350
    PTVTTLGSMQ EAHVFRSSSG CAAFLANYNS NSYAKVIFNN ENYSLPPWSI 400
    SILPDCKNVV FNTATVGVQT NQMQMWADGA SSMMWEKYDE EVDSLAAAPL 450
    LTSTGLLEQL NVTRDTSDYL WYITSVEVDP SEKFLQGGTP LSLTVQSAGH 500
    ALHVFINGQL QGSAYGTRED RKISYSGNAN LRAGTNKVAL LSVACGLPNV 550
    GVHYETWNTG VVGPVVIHGL DEGSRDLTWQ TWSYQVGLKG EQMNLNSLEG 600
    SGSVEWMQGS LVAQNQQPLA WYRAYFDTPS GDEPLALDMG SMGKGQIWIN 650
    GQSIGRYWTA YAEGDCKGCH YTGSYRAPKC QAGCGQPTQR WYHVPRSWLQ 700
    PTRNLLVVFE ELGGDSSKIA LAKRTVSGVC ADVSEYHPNI KNWQIESYGE 750
    PEFHTAKVHL KCAPGQTISA IKFASFGTPL GTCGTFQQGE CHSINSNSVL 800
    EKKCIGLQRC VVAISPSNFG GDPCPEVMKR VAVEAVCSTA A 841
    Length:841
    Mass (Da):92,172
    Last modified:August 22, 2006 - v1
    Checksum:i2D35B96E6CB7C250
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti475 – 4751S → R in AAM22973. 1 PublicationCurated
    Sequence conflicti475 – 4751S → R in AAM34271. 1 PublicationCurated
    Sequence conflicti585 – 5851Q → QFQ in AAM22973. 1 PublicationCurated
    Sequence conflicti585 – 5851Q → QFQ in AAM34271. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF499737 mRNA. Translation: AAM22973.1.
    AF508799 mRNA. Translation: AAM34271.1.
    DP000009 Genomic DNA. Translation: ABF94149.1.
    AP008209 Genomic DNA. Translation: BAF10982.1.
    AK102192 mRNA. No translation available.
    RefSeqiNP_001049068.1. NM_001055603.1.
    UniGeneiOs.13559.

    Genome annotation databases

    EnsemblPlantsiOS03T0165400-01; OS03T0165400-01; OS03G0165400.
    GeneIDi4331730.
    KEGGiosa:4331730.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF499737 mRNA. Translation: AAM22973.1 .
    AF508799 mRNA. Translation: AAM34271.1 .
    DP000009 Genomic DNA. Translation: ABF94149.1 .
    AP008209 Genomic DNA. Translation: BAF10982.1 .
    AK102192 mRNA. No translation available.
    RefSeqi NP_001049068.1. NM_001055603.1.
    UniGenei Os.13559.

    3D structure databases

    ProteinModelPortali Q10RB4.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Proteomic databases

    PRIDEi Q10RB4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0165400-01 ; OS03T0165400-01 ; OS03G0165400 .
    GeneIDi 4331730.
    KEGGi osa:4331730.

    Organism-specific databases

    Gramenei Q10RB4.

    Phylogenomic databases

    eggNOGi COG1874.
    HOGENOMi HOG000239919.
    OMAi TYDKKAI.

    Enzyme and pathway databases

    BRENDAi 3.2.1.23. 4460.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning and expression of beta-galactosidase from rice."
      Chantarangsee M., Mizuno K., Fujimura T., Ketudat-Cairns J.R.
      Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Nipponbare.
      Tissue: Seed.
    2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiBGAL5_ORYSJ
    AccessioniPrimary (citable) accession number: Q10RB4
    Secondary accession number(s): Q8L3P5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3