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Q10RB4

- BGAL5_ORYSJ

UniProt

Q10RB4 - BGAL5_ORYSJ

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Protein

Beta-galactosidase 5

Gene

Os03g0165400

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei183 – 1831Proton donorSequence Analysis
Active sitei252 – 2521NucleophileSequence Analysis

GO - Molecular functioni

  1. beta-galactosidase activity Source: UniProtKB-EC
  2. carbohydrate binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BRENDAi3.2.1.23. 4460.

Protein family/group databases

CAZyiGH35. Glycoside Hydrolase Family 35.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-galactosidase 5 (EC:3.2.1.23)
Short name:
Lactase 5
Gene namesi
Ordered Locus Names:Os03g0165400, LOC_Os03g06940
ORF Names:OJ1123F12.1
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 3

Organism-specific databases

GrameneiQ10RB4.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence AnalysisAdd
BLAST
Chaini26 – 841816Beta-galactosidase 5PRO_0000294157Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi392 – 3921N-linked (GlcNAc...)Sequence Analysis
Glycosylationi461 – 4611N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiQ10RB4.

Expressioni

Gene expression databases

ExpressionAtlasiQ10RB4. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ10RB4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini752 – 83887SUEL-type lectinPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 35 family.Curated
Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1874.
HOGENOMiHOG000239919.
InParanoidiQ10RB4.
OMAiTYDKKAI.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view]
PANTHERiPTHR23421. PTHR23421. 1 hit.
PfamiPF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSiPR00742. GLHYDRLASE35.
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q10RB4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGRGCLAALL GGAVAVAVLV AVVHCAVTYD KKAVLVDGQR RILFSGSIHY
60 70 80 90 100
PRSTPEMWDG LIEKAKDGGL DVIQTYVFWN GHEPTPGNYN FEGRYDLVRF
110 120 130 140 150
IKTVQKAGMF VHLRIGPYIC GEWNFGGFPV WLKYVPGISF RTDNEPFKNA
160 170 180 190 200
MQGFTEKIVG MMKSENLFAS QGGPIILSQI ENEYGPEGKE FGAAGKAYIN
210 220 230 240 250
WAAKMAVGLD TGVPWVMCKE DDAPDPVINA CNGFYCDTFS PNKPYKPTMW
260 270 280 290 300
TEAWSGWFTE FGGTIRQRPV EDLAFGVARF VQKGGSFINY YMYHGGTNFG
310 320 330 340 350
RTAGGPFITT SYDYDAPLDE YGLAREPKFG HLKELHRAVK LCEQPLVSAD
360 370 380 390 400
PTVTTLGSMQ EAHVFRSSSG CAAFLANYNS NSYAKVIFNN ENYSLPPWSI
410 420 430 440 450
SILPDCKNVV FNTATVGVQT NQMQMWADGA SSMMWEKYDE EVDSLAAAPL
460 470 480 490 500
LTSTGLLEQL NVTRDTSDYL WYITSVEVDP SEKFLQGGTP LSLTVQSAGH
510 520 530 540 550
ALHVFINGQL QGSAYGTRED RKISYSGNAN LRAGTNKVAL LSVACGLPNV
560 570 580 590 600
GVHYETWNTG VVGPVVIHGL DEGSRDLTWQ TWSYQVGLKG EQMNLNSLEG
610 620 630 640 650
SGSVEWMQGS LVAQNQQPLA WYRAYFDTPS GDEPLALDMG SMGKGQIWIN
660 670 680 690 700
GQSIGRYWTA YAEGDCKGCH YTGSYRAPKC QAGCGQPTQR WYHVPRSWLQ
710 720 730 740 750
PTRNLLVVFE ELGGDSSKIA LAKRTVSGVC ADVSEYHPNI KNWQIESYGE
760 770 780 790 800
PEFHTAKVHL KCAPGQTISA IKFASFGTPL GTCGTFQQGE CHSINSNSVL
810 820 830 840
EKKCIGLQRC VVAISPSNFG GDPCPEVMKR VAVEAVCSTA A
Length:841
Mass (Da):92,172
Last modified:August 22, 2006 - v1
Checksum:i2D35B96E6CB7C250
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti475 – 4751S → R in AAM22973. 1 PublicationCurated
Sequence conflicti475 – 4751S → R in AAM34271. 1 PublicationCurated
Sequence conflicti585 – 5851Q → QFQ in AAM22973. 1 PublicationCurated
Sequence conflicti585 – 5851Q → QFQ in AAM34271. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF499737 mRNA. Translation: AAM22973.1.
AF508799 mRNA. Translation: AAM34271.1.
DP000009 Genomic DNA. Translation: ABF94149.1.
AP008209 Genomic DNA. Translation: BAF10982.1.
AK102192 mRNA. No translation available.
RefSeqiNP_001049068.1. NM_001055603.1.
UniGeneiOs.13559.

Genome annotation databases

EnsemblPlantsiOS03T0165400-01; OS03T0165400-01; OS03G0165400.
GeneIDi4331730.
KEGGiosa:4331730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF499737 mRNA. Translation: AAM22973.1 .
AF508799 mRNA. Translation: AAM34271.1 .
DP000009 Genomic DNA. Translation: ABF94149.1 .
AP008209 Genomic DNA. Translation: BAF10982.1 .
AK102192 mRNA. No translation available.
RefSeqi NP_001049068.1. NM_001055603.1.
UniGenei Os.13559.

3D structure databases

ProteinModelPortali Q10RB4.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH35. Glycoside Hydrolase Family 35.

Proteomic databases

PRIDEi Q10RB4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS03T0165400-01 ; OS03T0165400-01 ; OS03G0165400 .
GeneIDi 4331730.
KEGGi osa:4331730.

Organism-specific databases

Gramenei Q10RB4.

Phylogenomic databases

eggNOGi COG1874.
HOGENOMi HOG000239919.
InParanoidi Q10RB4.
OMAi TYDKKAI.

Enzyme and pathway databases

BRENDAi 3.2.1.23. 4460.

Gene expression databases

ExpressionAtlasi Q10RB4. baseline.

Family and domain databases

Gene3Di 2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view ]
PANTHERi PTHR23421. PTHR23421. 1 hit.
Pfami PF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view ]
PRINTSi PR00742. GLHYDRLASE35.
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and expression of beta-galactosidase from rice."
    Chantarangsee M., Mizuno K., Fujimura T., Ketudat-Cairns J.R.
    Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Nipponbare.
    Tissue: Seed.
  2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiBGAL5_ORYSJ
AccessioniPrimary (citable) accession number: Q10RB4
Secondary accession number(s): Q8L3P5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: August 22, 2006
Last modified: October 29, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3