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Q10QL5 (BIP2C_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein phosphatase 2C BIPP2C1

EC=3.1.3.16
Alternative name(s):
BTH-induced protein phosphatase 2C 1
Short name=OsBIPP2C1
Gene names
Name:BIPP2C1
Ordered Locus Names:Os03g0192500, LOC_Os03g09220
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length569 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May play a role in responses to biotic and abiotic stresses By similarity.

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the PP2C family.

Contains 1 PP2C-like domain.

Sequence caution

The sequence ABF94414.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   LigandMagnesium
Manganese
Metal-binding
   Molecular functionHydrolase
Protein phosphatase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

phosphoprotein phosphatase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q10QL5-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q10QL5-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-36: MDEEARAAGC...ELCLCSPTGV → MKRRAPPDAP...LVWFGVGLDA
Note: Derived from EST data. No experimental confirmation available.
Isoform 3 (identifier: Q10QL5-3)

The sequence of this isoform differs from the canonical sequence as follows:
     35-36: Missing.
Note: Derived from EST data. May be due to a competing donor splice site. No experimental confirmation available.
Isoform 4 (identifier: Q10QL5-4)

The sequence of this isoform differs from the canonical sequence as follows:
     121-256: Missing.
Note: Derived from EST data. No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 569569Probable protein phosphatase 2C BIPP2C1
PRO_0000363327

Regions

Domain327 – 564238PP2C-like

Sites

Metal binding3581Manganese 1 By similarity
Metal binding3581Manganese 2 By similarity
Metal binding3591Manganese 1; via carbonyl oxygen By similarity
Metal binding4881Manganese 2 By similarity
Metal binding5551Manganese 2 By similarity

Natural variations

Alternative sequence1 – 3636MDEEA…SPTGV → MKRRAPPDAPQRRPARRLLP VALPPSSASAPLQVWVRGIH ACLISFGFGSRFDLVLVWFG VGLDA in isoform 2.
VSP_036286
Alternative sequence35 – 362Missing in isoform 3.
VSP_036287
Alternative sequence121 – 256136Missing in isoform 4.
VSP_036288

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 5ACFAA6EB5E5254E

FASTA56958,800
        10         20         30         40         50         60 
MDEEARAAGC SPAPPRAPAA SCGAAAELCL CSPTGVEGIE QVPGCPCFED AGAVVVSGEA 

        70         80         90        100        110        120 
PEGPGVLCSE DGAELKLAEQ GALDVRLGSP AVGIHEQQLL HRGTSGSDEA GAINEISPVE 

       130        140        150        160        170        180 
VSPSEASSNL DTAGAIGGSP LMLESLPETS DTRGCEQEVM PGVVVGSSNR DASSEVGVES 

       190        200        210        220        230        240 
ERGSDADGRN GLGEGELVSS VDGGGAEKSS KVTGVLSEEG VDGMETALEP CVASVGSITQ 

       250        260        270        280        290        300 
VEEGVDRMET SLDDSEASDG STTQDFDTDV ETESSGSSIE EQDMGYGVHI PHTEQAICEV 

       310        320        330        340        350        360 
ARGNKSSEVK SSDRMSSVTL PTLILASGAA MLPHPSKVLT GGEDAYFIAC DGWFGVADGV 

       370        380        390        400        410        420 
GQWSFEGINA GLYARELMDG CKKAVMESQG APEMRTEEVL AKAADEARSP GSSTVLVAHF 

       430        440        450        460        470        480 
DGQVLHACNI GDSGFLVIRN GEIYQKSKPM TYGFNFPLQI EKGDDPFKLV QKYTIDLQEG 

       490        500        510        520        530        540 
DAIVTATDGL FDNVYEEEIA AVISKSLEAG LKPSEIAEFL VARAKEVGRS ATCRSPFSDA 

       550        560 
ALAVGYLGYS GGKLDDVTVV VSVVRKSEV 

« Hide

Isoform 2 [UniParc].

Checksum: 19BF1BFCE7F33A60
Show »

FASTA59862,490
Isoform 3 [UniParc].

Checksum: D7A97971D46CBF73
Show »

FASTA56758,644
Isoform 4 [UniParc].

Checksum: F5C3792963532A86
Show »

FASTA43345,179

References

« Hide 'large scale' references
[1]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DP000009 Genomic DNA. Translation: ABF94412.1.
DP000009 Genomic DNA. Translation: ABF94413.1.
DP000009 Genomic DNA. Translation: ABF94414.1. Sequence problems.
DP000009 Genomic DNA. Translation: ABF94415.1.
DP000009 Genomic DNA. Translation: ABF94416.1.
AP008209 Genomic DNA. Translation: BAF11154.1.
AK068957 mRNA. Translation: BAG91182.1.
RefSeqNP_001049240.1. NM_001055775.1. [Q10QL5-1]
UniGeneOs.7974.

3D structure databases

ProteinModelPortalQ10QL5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS03T0192500-01; OS03T0192500-01; OS03G0192500. [Q10QL5-1]
GeneID4331915.
KEGGosa:4331915.

Organism-specific databases

GrameneQ10QL5.

Phylogenomic databases

eggNOGCOG0631.
OMAHASNIGD.

Family and domain databases

Gene3D3.60.40.10. 2 hits.
InterProIPR001932. PP2C-like_dom.
[Graphical view]
PfamPF07228. SpoIIE. 1 hit.
[Graphical view]
SMARTSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. SSF81606. 1 hit.
ProtoNetSearch...

Entry information

Entry nameBIP2C_ORYSJ
AccessionPrimary (citable) accession number: Q10QL5
Secondary accession number(s): Q10QL1 expand/collapse secondary AC list , Q10QL2, Q10QL3, Q10QL4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations