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Q10QL5

- BIP2C_ORYSJ

UniProt

Q10QL5 - BIP2C_ORYSJ

Protein

Probable protein phosphatase 2C BIPP2C1

Gene

BIPP2C1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    May play a role in responses to biotic and abiotic stresses.By similarity

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi358 – 3581Manganese 1By similarity
    Metal bindingi358 – 3581Manganese 2By similarity
    Metal bindingi359 – 3591Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi488 – 4881Manganese 2By similarity
    Metal bindingi555 – 5551Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. phosphoprotein phosphatase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C BIPP2C1 (EC:3.1.3.16)
    Alternative name(s):
    BTH-induced protein phosphatase 2C 1
    Short name:
    OsBIPP2C1
    Gene namesi
    Name:BIPP2C1
    Ordered Locus Names:Os03g0192500, LOC_Os03g09220
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ10QL5.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 569569Probable protein phosphatase 2C BIPP2C1PRO_0000363327Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ10QL5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini327 – 564238PP2C-likeAdd
    BLAST

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    OMAiHASNIGD.

    Family and domain databases

    Gene3Di3.60.40.10. 2 hits.
    InterProiIPR001932. PP2C-like_dom.
    [Graphical view]
    PfamiPF07228. SpoIIE. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 1 hit.

    Sequences (4)i

    Sequence statusi: Complete.

    This entry describes 4 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q10QL5-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MDEEARAAGC SPAPPRAPAA SCGAAAELCL CSPTGVEGIE QVPGCPCFED    50
    AGAVVVSGEA PEGPGVLCSE DGAELKLAEQ GALDVRLGSP AVGIHEQQLL 100
    HRGTSGSDEA GAINEISPVE VSPSEASSNL DTAGAIGGSP LMLESLPETS 150
    DTRGCEQEVM PGVVVGSSNR DASSEVGVES ERGSDADGRN GLGEGELVSS 200
    VDGGGAEKSS KVTGVLSEEG VDGMETALEP CVASVGSITQ VEEGVDRMET 250
    SLDDSEASDG STTQDFDTDV ETESSGSSIE EQDMGYGVHI PHTEQAICEV 300
    ARGNKSSEVK SSDRMSSVTL PTLILASGAA MLPHPSKVLT GGEDAYFIAC 350
    DGWFGVADGV GQWSFEGINA GLYARELMDG CKKAVMESQG APEMRTEEVL 400
    AKAADEARSP GSSTVLVAHF DGQVLHACNI GDSGFLVIRN GEIYQKSKPM 450
    TYGFNFPLQI EKGDDPFKLV QKYTIDLQEG DAIVTATDGL FDNVYEEEIA 500
    AVISKSLEAG LKPSEIAEFL VARAKEVGRS ATCRSPFSDA ALAVGYLGYS 550
    GGKLDDVTVV VSVVRKSEV 569
    Length:569
    Mass (Da):58,800
    Last modified:August 22, 2006 - v1
    Checksum:i5ACFAA6EB5E5254E
    GO
    Isoform 2 (identifier: Q10QL5-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-36: MDEEARAAGC...ELCLCSPTGV → MKRRAPPDAP...LVWFGVGLDA

    Note: Derived from EST data. No experimental confirmation available.

    Show »
    Length:598
    Mass (Da):62,490
    Checksum:i19BF1BFCE7F33A60
    GO
    Isoform 3 (identifier: Q10QL5-3) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         35-36: Missing.

    Note: Derived from EST data. May be due to a competing donor splice site. No experimental confirmation available.

    Show »
    Length:567
    Mass (Da):58,644
    Checksum:iD7A97971D46CBF73
    GO
    Isoform 4 (identifier: Q10QL5-4) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         121-256: Missing.

    Note: Derived from EST data. No experimental confirmation available.

    Show »
    Length:433
    Mass (Da):45,179
    Checksum:iF5C3792963532A86
    GO

    Sequence cautioni

    The sequence ABF94414.1 differs from that shown. Reason: Erroneous gene model prediction.

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 3636MDEEA…SPTGV → MKRRAPPDAPQRRPARRLLP VALPPSSASAPLQVWVRGIH ACLISFGFGSRFDLVLVWFG VGLDA in isoform 2. CuratedVSP_036286Add
    BLAST
    Alternative sequencei35 – 362Missing in isoform 3. CuratedVSP_036287
    Alternative sequencei121 – 256136Missing in isoform 4. CuratedVSP_036288Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000009 Genomic DNA. Translation: ABF94412.1.
    DP000009 Genomic DNA. Translation: ABF94413.1.
    DP000009 Genomic DNA. Translation: ABF94414.1. Sequence problems.
    DP000009 Genomic DNA. Translation: ABF94415.1.
    DP000009 Genomic DNA. Translation: ABF94416.1.
    AP008209 Genomic DNA. Translation: BAF11154.1.
    AK068957 mRNA. Translation: BAG91182.1.
    RefSeqiNP_001049240.1. NM_001055775.1. [Q10QL5-1]
    UniGeneiOs.7974.

    Genome annotation databases

    EnsemblPlantsiOS03T0192500-01; OS03T0192500-01; OS03G0192500. [Q10QL5-1]
    GeneIDi4331915.
    KEGGiosa:4331915.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000009 Genomic DNA. Translation: ABF94412.1 .
    DP000009 Genomic DNA. Translation: ABF94413.1 .
    DP000009 Genomic DNA. Translation: ABF94414.1 . Sequence problems.
    DP000009 Genomic DNA. Translation: ABF94415.1 .
    DP000009 Genomic DNA. Translation: ABF94416.1 .
    AP008209 Genomic DNA. Translation: BAF11154.1 .
    AK068957 mRNA. Translation: BAG91182.1 .
    RefSeqi NP_001049240.1. NM_001055775.1. [Q10QL5-1 ]
    UniGenei Os.7974.

    3D structure databases

    ProteinModelPortali Q10QL5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0192500-01 ; OS03T0192500-01 ; OS03G0192500 . [Q10QL5-1 ]
    GeneIDi 4331915.
    KEGGi osa:4331915.

    Organism-specific databases

    Gramenei Q10QL5.

    Phylogenomic databases

    eggNOGi COG0631.
    OMAi HASNIGD.

    Family and domain databases

    Gene3Di 3.60.40.10. 2 hits.
    InterProi IPR001932. PP2C-like_dom.
    [Graphical view ]
    Pfami PF07228. SpoIIE. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiBIP2C_ORYSJ
    AccessioniPrimary (citable) accession number: Q10QL5
    Secondary accession number(s): Q10QL1
    , Q10QL2, Q10QL3, Q10QL4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3