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Protein

Probable protein phosphatase 2C BIPP2C1

Gene

BIPP2C1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in responses to biotic and abiotic stresses.By similarity

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi358 – 3581Manganese 1By similarity
Metal bindingi358 – 3581Manganese 2By similarity
Metal bindingi359 – 3591Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi488 – 4881Manganese 2By similarity
Metal bindingi555 – 5551Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C BIPP2C1 (EC:3.1.3.16)
Alternative name(s):
BTH-induced protein phosphatase 2C 1
Short name:
OsBIPP2C1
Gene namesi
Name:BIPP2C1
Ordered Locus Names:Os03g0192500, LOC_Os03g09220
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 3

Organism-specific databases

GrameneiQ10QL5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 569569Probable protein phosphatase 2C BIPP2C1PRO_0000363327Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ10QL5. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ10QL5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini327 – 564238PP2C-likeAdd
BLAST

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PP2C-like domain.Curated

Phylogenomic databases

eggNOGiCOG0631.
InParanoidiQ10QL5.
OMAiHPSKVLT.

Family and domain databases

Gene3Di3.60.40.10. 2 hits.
InterProiIPR001932. PP2C-like_dom.
[Graphical view]
PfamiPF07228. SpoIIE. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q10QL5-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDEEARAAGC SPAPPRAPAA SCGAAAELCL CSPTGVEGIE QVPGCPCFED
60 70 80 90 100
AGAVVVSGEA PEGPGVLCSE DGAELKLAEQ GALDVRLGSP AVGIHEQQLL
110 120 130 140 150
HRGTSGSDEA GAINEISPVE VSPSEASSNL DTAGAIGGSP LMLESLPETS
160 170 180 190 200
DTRGCEQEVM PGVVVGSSNR DASSEVGVES ERGSDADGRN GLGEGELVSS
210 220 230 240 250
VDGGGAEKSS KVTGVLSEEG VDGMETALEP CVASVGSITQ VEEGVDRMET
260 270 280 290 300
SLDDSEASDG STTQDFDTDV ETESSGSSIE EQDMGYGVHI PHTEQAICEV
310 320 330 340 350
ARGNKSSEVK SSDRMSSVTL PTLILASGAA MLPHPSKVLT GGEDAYFIAC
360 370 380 390 400
DGWFGVADGV GQWSFEGINA GLYARELMDG CKKAVMESQG APEMRTEEVL
410 420 430 440 450
AKAADEARSP GSSTVLVAHF DGQVLHACNI GDSGFLVIRN GEIYQKSKPM
460 470 480 490 500
TYGFNFPLQI EKGDDPFKLV QKYTIDLQEG DAIVTATDGL FDNVYEEEIA
510 520 530 540 550
AVISKSLEAG LKPSEIAEFL VARAKEVGRS ATCRSPFSDA ALAVGYLGYS
560
GGKLDDVTVV VSVVRKSEV
Length:569
Mass (Da):58,800
Last modified:August 22, 2006 - v1
Checksum:i5ACFAA6EB5E5254E
GO
Isoform 2 (identifier: Q10QL5-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-36: MDEEARAAGC...ELCLCSPTGV → MKRRAPPDAP...LVWFGVGLDA

Note: Derived from EST data. No experimental confirmation available.

Show »
Length:598
Mass (Da):62,490
Checksum:i19BF1BFCE7F33A60
GO
Isoform 3 (identifier: Q10QL5-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     35-36: Missing.

Note: Derived from EST data. May be due to a competing donor splice site. No experimental confirmation available.

Show »
Length:567
Mass (Da):58,644
Checksum:iD7A97971D46CBF73
GO
Isoform 4 (identifier: Q10QL5-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     121-256: Missing.

Note: Derived from EST data. No experimental confirmation available.

Show »
Length:433
Mass (Da):45,179
Checksum:iF5C3792963532A86
GO

Sequence cautioni

The sequence ABF94414.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 3636MDEEA…SPTGV → MKRRAPPDAPQRRPARRLLP VALPPSSASAPLQVWVRGIH ACLISFGFGSRFDLVLVWFG VGLDA in isoform 2. CuratedVSP_036286Add
BLAST
Alternative sequencei35 – 362Missing in isoform 3. CuratedVSP_036287
Alternative sequencei121 – 256136Missing in isoform 4. CuratedVSP_036288Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000009 Genomic DNA. Translation: ABF94412.1.
DP000009 Genomic DNA. Translation: ABF94413.1.
DP000009 Genomic DNA. Translation: ABF94414.1. Sequence problems.
DP000009 Genomic DNA. Translation: ABF94415.1.
DP000009 Genomic DNA. Translation: ABF94416.1.
AP008209 Genomic DNA. Translation: BAF11154.1.
AK068957 mRNA. Translation: BAG91182.1.
RefSeqiNP_001049240.1. NM_001055775.1. [Q10QL5-1]
UniGeneiOs.7974.

Genome annotation databases

EnsemblPlantsiOS03T0192500-01; OS03T0192500-01; OS03G0192500. [Q10QL5-1]
GeneIDi4331915.
KEGGiosa:4331915.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000009 Genomic DNA. Translation: ABF94412.1.
DP000009 Genomic DNA. Translation: ABF94413.1.
DP000009 Genomic DNA. Translation: ABF94414.1. Sequence problems.
DP000009 Genomic DNA. Translation: ABF94415.1.
DP000009 Genomic DNA. Translation: ABF94416.1.
AP008209 Genomic DNA. Translation: BAF11154.1.
AK068957 mRNA. Translation: BAG91182.1.
RefSeqiNP_001049240.1. NM_001055775.1. [Q10QL5-1]
UniGeneiOs.7974.

3D structure databases

ProteinModelPortaliQ10QL5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0192500-01; OS03T0192500-01; OS03G0192500. [Q10QL5-1]
GeneIDi4331915.
KEGGiosa:4331915.

Organism-specific databases

GrameneiQ10QL5.

Phylogenomic databases

eggNOGiCOG0631.
InParanoidiQ10QL5.
OMAiHPSKVLT.

Gene expression databases

ExpressionAtlasiQ10QL5. baseline.

Family and domain databases

Gene3Di3.60.40.10. 2 hits.
InterProiIPR001932. PP2C-like_dom.
[Graphical view]
PfamiPF07228. SpoIIE. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiBIP2C_ORYSJ
AccessioniPrimary (citable) accession number: Q10QL5
Secondary accession number(s): Q10QL1
, Q10QL2, Q10QL3, Q10QL4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: August 22, 2006
Last modified: January 7, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.