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Protein

Metallothionein-like protein 1B

Gene

MT1B

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Metal-thiolate cluster

Names & Taxonomyi

Protein namesi
Recommended name:
Metallothionein-like protein 1B
Alternative name(s):
Class I metallothionein-like protein 1B
OsMT-I-1b
Gene namesi
Name:MT1B
Ordered Locus Names:Os03g0288000, LOC_Os03g17870
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 3

Organism-specific databases

GrameneiQ10N03.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7272Metallothionein-like protein 1BPRO_0000263055Add
BLAST

Expressioni

Tissue specificityi

Expressed in leaves of mature plants.1 Publication

Gene expression databases

ExpressionAtlasiQ10N03. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os03g17870.1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG260937.
HOGENOMiHOG000220916.
InParanoidiQ10N03.
OMAiGGNCKCD.

Family and domain databases

InterProiIPR000347. Metalthion_15p.
[Graphical view]
PfamiPF01439. Metallothio_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10N03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCSCGSSCG CGSNCTCGKM YPDLEEKSSS AQATVVLGVA PEKAHFEAAA
60 70
ESGETAHGCG CGSSCKCNPC NC
Length:72
Mass (Da):7,134
Last modified:August 22, 2006 - v1
Checksum:i4D59D3BA198F3466
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000009 Genomic DNA. Translation: ABF95371.1.
AP008209 Genomic DNA. Translation: BAF11696.1.
AK059587 mRNA. No translation available.
RefSeqiNP_001049782.1. NM_001056317.1.
UniGeneiOs.32714.

Genome annotation databases

EnsemblPlantsiOS03T0288000-01; OS03T0288000-01; OS03G0288000.
OS03T0288000-02; OS03T0288000-02; OS03G0288000.
GeneIDi4332487.
KEGGiosa:4332487.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000009 Genomic DNA. Translation: ABF95371.1.
AP008209 Genomic DNA. Translation: BAF11696.1.
AK059587 mRNA. No translation available.
RefSeqiNP_001049782.1. NM_001056317.1.
UniGeneiOs.32714.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os03g17870.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0288000-01; OS03T0288000-01; OS03G0288000.
OS03T0288000-02; OS03T0288000-02; OS03G0288000.
GeneIDi4332487.
KEGGiosa:4332487.

Organism-specific databases

GrameneiQ10N03.

Phylogenomic databases

eggNOGiNOG260937.
HOGENOMiHOG000220916.
InParanoidiQ10N03.
OMAiGGNCKCD.

Gene expression databases

ExpressionAtlasiQ10N03. baseline and differential.

Family and domain databases

InterProiIPR000347. Metalthion_15p.
[Graphical view]
PfamiPF01439. Metallothio_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  5. "Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.)."
    Zhou G., Xu Y., Li J., Yang L., Liu J.-Y.
    J. Biochem. Mol. Biol. 39:595-606(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY.

Entry informationi

Entry nameiMT1B_ORYSJ
AccessioniPrimary (citable) accession number: Q10N03
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: August 22, 2006
Last modified: July 22, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Metallothioneins
    Classification of metallothioneins and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.