Thioredoxin-like 1-2, chloroplastic precursor - Oryza sativa subsp. japonica (Rice)

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Q10M18 (TRL12_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 50. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Thioredoxin-like 1-2, chloroplastic

Alternative name(s):
Lilium-type thioredoxin 1-2

Gene names

Ordered Locus Names:

Os03g0326500, LOC_Os03g21000

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza ›

Protein attributes

Sequence length	279 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Subcellular location	Plastid › chloroplast Potential.
Sequence similarities	Belongs to the thioredoxin family. Contains 1 thioredoxin domain.
Caution	The active site contains a CGGC motif wich differs from the conserved CGPC motif.
Sequence caution	The sequence BAF11906.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Electron transport Transport
Cellular component	Chloroplast Plastid
Domain	Redox-active center Transit peptide
PTM	Disulfide bond
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	cell redox homeostasis Inferred from electronic annotation. Source: InterPro electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW glycerol ether metabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast stroma Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	electron carrier activity Inferred from electronic annotation. Source: InterPro oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Inferred from electronic annotation. Source: EnsemblPlants/Gramene protein disulfide oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Transit peptide

1 – 34

Chloroplast Potential

Chain

35 – 279

245

Thioredoxin-like 1-2, chloroplastic

PRO_0000394838

Regions

Domain

61 – 203

143

Thioredoxin

Sites

Active site

126

Nucleophile Potential

Active site

129

Nucleophile Potential

Amino acid modifications

Disulfide bond

126 ↔ 129

Redox-active By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

Q10M18 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 06D14961BE7474D9
Show »

FASTA

279

30,238

        10         20         30         40         50         60 
MAATAAQAVA VKGSVAVPPC GSRGRRRGAV ASVRMAAAAA TSALRIGRRS PFLGRRLAVG 

        70         80         90        100        110        120 
PRRSRPVPRN LVAPVQMNLA FAKATKWWEK GLQPNMREVE SAQDLVDSLT NAGDNLVIVD 

       130        140        150        160        170        180 
FFSPGCGGCR ALHPKICQIA EQNPDVLFLQ VNYEEHKSMC YSLHVHVLPF FRFYRGAQGR 

       190        200        210        220        230        240 
LCSFSCTNAT IKKFRDALAK HKPDRCSLGP TRGLEESELL ALAANKDLQF NYTKKPELVP 

       250        260        270 
SGDAAAAQEL DRGSTKLSPP AKPLVKQGSE ERSLVSSGR

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species." The rice chromosome 3 sequencing consortium Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. Jackson S. Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 170-279. Strain: cv. Nipponbare.
[5]	"Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa." Chibani K., Wingsle G., Jacquot J.P., Gelhaye E., Rouhier N. Mol. Plant 2:308-322(2009) [PubMed] [Europe PMC] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DP000009 Genomic DNA. Translation: ABF95720.1. AP008209 Genomic DNA. Translation: BAF11906.1. Sequence problems. AK058426 mRNA. No translation available.
RefSeq	NP_001049992.1. NM_001056527.1.
UniGene	Os.5830.
3D structure databases
ProteinModelPortal	Q10M18.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os03g21000.1; LOC_Os03g21000.1; LOC_Os03g21000.
GeneID	4332712.
KEGG	osa:4332712.
Organism-specific databases
Gramene	Q10M18.
Phylogenomic databases
eggNOG	NOG322880.
Gene expression databases
ArrayExpress	Q10M18.
Family and domain databases
Gene3D	3.40.30.10. 1 hit.
InterPro	IPR005746. Thioredoxin. IPR012336. Thioredoxin-like_fold. IPR013766. Thioredoxin_domain. [Graphical view]
PANTHER	PTHR10438. PTHR10438. 1 hit.
Pfam	PF00085. Thioredoxin. 1 hit. [Graphical view]
SUPFAM	SSF52833. Thiordxn-like_fd. 1 hit.
PROSITE	PS00194. THIOREDOXIN_1. False negative. PS51352. THIOREDOXIN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

TRL12_ORYSJ

Accession

Primary (citable) accession number: Q10M18
Secondary accession number(s): Q0DS82

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 15, 2010
Last sequence update:	August 22, 2006
Last modified:	April 3, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Sites

Amino acid modifications

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Entry information

Relevant documents