Q10M00 (C3H22_ORYSJ) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 44.
History...
Clusters with 
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger CCCH domain-containing protein 22 Short name=OsC3H22 | ||
| Gene names |
| ||
| Organism | Oryza sativa subsp. japonica (Rice) [Reference proteome] | ||
| Taxonomic identifier | 39947 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza ›  |
Protein attributes
| Sequence length | 688 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Sequence similarities | Contains 1 C3H1-type zinc finger. Contains 1 RRM (RNA recognition motif) domain. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing |
| Domain | Coiled coil Zinc-finger |
| Ligand | DNA-binding Metal-binding RNA-binding Zinc |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Molecular_function | DNA binding Inferred from electronic annotation. Source: UniProtKB-KW RNA bindingInferred from electronic annotation. Source: UniProtKB-KW nucleotide bindingInferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q10M00-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q10M00-2) The sequence of this isoform differs from the canonical sequence as follows: 677-677: Missing. | ||||||
| Note: May be due to a competing acceptor splice site. No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 688 | 688 | Zinc finger CCCH domain-containing protein 22 | PRO_0000346818 | |||||
Regions | |||||||||
| Domain | 366 – 442 | 77 | RRM | ||||||
| Zinc finger | 233 – 260 | 28 | C3H1-type | ||||||
| Coiled coil | 487 – 522 | 36 | Potential | ||||||
| Compositional bias | 65 – 70 | 6 | Poly-Pro | ||||||
| Compositional bias | 329 – 334 | 6 | Poly-Ala | ||||||
Natural variations | |||||||||
| Alternative sequence | 677 | 1 | Missing in isoform 2. | VSP_035019 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species." The rice chromosome 3 sequencing consortium Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.  Jackson S.Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [2] | "The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [3] | "The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare. |
| [4] | "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Strain: cv. Nipponbare. |
| [5] | "Oryza sativa full length cDNA." The rice full-length cDNA consortium Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Strain: cv. Nipponbare. |
| [6] | "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice." Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C. BMC Genomics 9:44-44(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NOMENCLATURE. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | DP000009 Genomic DNA. Translation: ABF95737.1. DP000009 Genomic DNA. Translation: ABF95738.1. AP008209 Genomic DNA. Translation: BAF11916.1. AK102616 mRNA. No translation available. AK288601 mRNA. No translation available. |
| RefSeq | NP_001050002.1. NM_001056537.1. |
| UniGene | Os.49095. |
3D structure databases | |
| ProteinModelPortal | Q10M00. |
| ModBase | Search... |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | LOC_Os03g21140.1; LOC_Os03g21140.1; LOC_Os03g21140. |
| GeneID | 4332722. |
| KEGG | osa:4332722. |
Organism-specific databases | |
| Gramene | Q10M00. |
Phylogenomic databases | |
| eggNOG | NOG276617. |
| HOGENOM | HOG000242520. |
| OMA | RDPFDLH. |
| ProtClustDB | CLSN2693894. |
Gene expression databases | |
| ArrayExpress | Q10M00. |
Family and domain databases | |
| Gene3D | 3.30.70.330. 1 hit. |
| InterPro | IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. IPR000571. Znf_CCCH. [Graphical view] |
| Pfam | PF00642. zf-CCCH. 1 hit. [Graphical view] |
| SMART | SM00360. RRM. 1 hit. SM00356. ZnF_C3H1. 1 hit. [Graphical view] |
| PROSITE | PS50102. RRM. 1 hit. PS50103. ZF_C3H1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | C3H22_ORYSJ | ||||||||
| Accession | Primary (citable) accession number: Q10M00 Secondary accession number(s): Q10M01 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Oryza sativa (rice) Index of Oryza sativa entries and their corresponding gene designations |
| SIMILARITY comments Index of protein domains and families |