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Protein

Cyclin-H1-1

Gene

CYCH1-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.2 Publications

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Cyclin

Keywords - Biological processi

Cell cycle, Cell division

Enzyme and pathway databases

ReactomeiR-OSA-113418. Formation of the Early Elongation Complex.
R-OSA-5696395. Formation of Incision Complex in GG-NER.
R-OSA-674695. RNA Polymerase II Pre-transcription Events.
R-OSA-6781823. Formation of TC-NER Pre-Incision Complex.
R-OSA-6782135. Dual incision in TC-NER.
R-OSA-6782210. Gap-filling DNA repair synthesis and ligation in TC-NER.
R-OSA-72086. mRNA Capping.
R-OSA-73776. RNA Polymerase II Promoter Escape.
R-OSA-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-OSA-75953. RNA Polymerase II Transcription Initiation.
R-OSA-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.
R-OSA-77075. RNA Pol II CTD phosphorylation and interaction with CE.

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-H1-1
Short name:
CycH1;1
Alternative name(s):
Cyclin-H-1
Short name:
CycH-1
Gene namesi
Name:CYCH1-1
Synonyms:CYCH-1
Ordered Locus Names:Os03g0737600, LOC_Os03g52750
ORF Names:OsJ_12494Imported, OSJNBa0084L17.8, OSJNBb0016H12.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 3

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 330330Cyclin-H1-1PRO_0000287050Add
BLAST

Proteomic databases

PaxDbiQ10D80.

Expressioni

Tissue specificityi

Expressed in roots, nodes and internodes, and at lower levels in shoots and leaves. Expressed in the intercalary meristem of internodes and at lower levels in the elongation zone and differentiation zone.1 Publication

Developmental stagei

Expressed in the S and G2 phases.1 Publication

Inductioni

By submergence in the meristematic zone of internodes.1 Publication

Gene expression databases

ExpressionAtlasiQ10D80. baseline.
GenevisibleiQ10D80. OS.

Interactioni

Subunit structurei

Interacts specifically with CDKD-1/CAK-R2.1 Publication

Protein-protein interaction databases

STRINGi39947.LOC_Os03g52750.1.

Structurei

3D structure databases

ProteinModelPortaliQ10D80.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the cyclin family. Cyclin F subfamily.Curated

Phylogenomic databases

eggNOGiKOG2496. Eukaryota.
COG5333. LUCA.
HOGENOMiHOG000030045.
InParanoidiQ10D80.
OMAiTHRERWM.
OrthoDBiEOG09360G29.

Family and domain databases

Gene3Di1.10.472.10. 2 hits.
InterProiIPR013763. Cyclin-like.
IPR031658. Cyclin_C_2.
IPR006671. Cyclin_N.
[Graphical view]
PfamiPF16899. Cyclin_C_2. 1 hit.
PF00134. Cyclin_N. 1 hit.
[Graphical view]
SMARTiSM00385. CYCLIN. 1 hit.
[Graphical view]
SUPFAMiSSF47954. SSF47954. 2 hits.

Sequencei

Sequence statusi: Complete.

Q10D80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADFRTSTHR ERWIFQTNDL MDRWGAANQR ATETLVQYGT TRLKVDPVDG
60 70 80 90 100
SLSYPEPAPD HVVGSSGVKP LSCEEERLMR VFYEQKIQEV CSAFKFPHKI
110 120 130 140 150
QATAIIYFKR FYLQWSVMEH HPKHIMLTCI YSSCKVEENH VSAEELGKGI
160 170 180 190 200
QQDHQIILNN EMIVLKSLDF DLIVYAPYRS IEGFVDDMED FCRAGNGEHQ
210 220 230 240 250
RLQDLRQTAI SQVDKMMLTD APLLYTPGQL ALAALHKSND MHKILNFERY
260 270 280 290 300
LESVFSRQHS DCPIEQFVGS INMINYLVEQ LKIPTPKDMR HIDRKLKHCL
310 320 330
DPSSQDEHKK KEKKSKHKSK RAANEAQLDS
Length:330
Mass (Da):38,255
Last modified:August 22, 2006 - v1
Checksum:i795611030F074FA6
GO

Sequence cautioni

The sequence AAP03415 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence AAR07076 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB038234 mRNA. Translation: BAB11694.1.
AY387483 Genomic DNA. Translation: AAR07076.1. Sequence problems.
AC118133 Genomic DNA. Translation: AAP03415.1. Sequence problems.
DP000009 Genomic DNA. Translation: ABF98764.1.
AP008209 Genomic DNA. Translation: BAF13117.1.
AP014959 Genomic DNA. Translation: BAS86279.1.
CM000140 Genomic DNA. Translation: EEE59890.1.
AK101854 mRNA. Translation: BAG95259.1.
AK105468 mRNA. Translation: BAG97262.1.
RefSeqiXP_015628150.1. XM_015772664.1.
UniGeneiOs.3905.

Genome annotation databases

EnsemblPlantsiOS03T0737600-01; OS03T0737600-01; OS03G0737600.
GeneIDi4334040.
GrameneiOS03T0737600-01; OS03T0737600-01; OS03G0737600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB038234 mRNA. Translation: BAB11694.1.
AY387483 Genomic DNA. Translation: AAR07076.1. Sequence problems.
AC118133 Genomic DNA. Translation: AAP03415.1. Sequence problems.
DP000009 Genomic DNA. Translation: ABF98764.1.
AP008209 Genomic DNA. Translation: BAF13117.1.
AP014959 Genomic DNA. Translation: BAS86279.1.
CM000140 Genomic DNA. Translation: EEE59890.1.
AK101854 mRNA. Translation: BAG95259.1.
AK105468 mRNA. Translation: BAG97262.1.
RefSeqiXP_015628150.1. XM_015772664.1.
UniGeneiOs.3905.

3D structure databases

ProteinModelPortaliQ10D80.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os03g52750.1.

Proteomic databases

PaxDbiQ10D80.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0737600-01; OS03T0737600-01; OS03G0737600.
GeneIDi4334040.
GrameneiOS03T0737600-01; OS03T0737600-01; OS03G0737600.

Phylogenomic databases

eggNOGiKOG2496. Eukaryota.
COG5333. LUCA.
HOGENOMiHOG000030045.
InParanoidiQ10D80.
OMAiTHRERWM.
OrthoDBiEOG09360G29.

Enzyme and pathway databases

ReactomeiR-OSA-113418. Formation of the Early Elongation Complex.
R-OSA-5696395. Formation of Incision Complex in GG-NER.
R-OSA-674695. RNA Polymerase II Pre-transcription Events.
R-OSA-6781823. Formation of TC-NER Pre-Incision Complex.
R-OSA-6782135. Dual incision in TC-NER.
R-OSA-6782210. Gap-filling DNA repair synthesis and ligation in TC-NER.
R-OSA-72086. mRNA Capping.
R-OSA-73776. RNA Polymerase II Promoter Escape.
R-OSA-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-OSA-75953. RNA Polymerase II Transcription Initiation.
R-OSA-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.
R-OSA-77075. RNA Pol II CTD phosphorylation and interaction with CE.

Gene expression databases

ExpressionAtlasiQ10D80. baseline.
GenevisibleiQ10D80. OS.

Family and domain databases

Gene3Di1.10.472.10. 2 hits.
InterProiIPR013763. Cyclin-like.
IPR031658. Cyclin_C_2.
IPR006671. Cyclin_N.
[Graphical view]
PfamiPF16899. Cyclin_C_2. 1 hit.
PF00134. Cyclin_N. 1 hit.
[Graphical view]
SMARTiSM00385. CYCLIN. 1 hit.
[Graphical view]
SUPFAMiSSF47954. SSF47954. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiCCH11_ORYSJ
AccessioniPrimary (citable) accession number: Q10D80
Secondary accession number(s): B7ESB2
, Q6TUB9, Q84R39, Q9FZN6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: August 22, 2006
Last modified: September 7, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.