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Protein

Cyclin-H1-1

Gene

CYCH1-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2.2 Publications

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionCyclin
Biological processCell cycle, Cell division

Enzyme and pathway databases

ReactomeiR-OSA-113418 Formation of the Early Elongation Complex
R-OSA-5696395 Formation of Incision Complex in GG-NER
R-OSA-674695 RNA Polymerase II Pre-transcription Events
R-OSA-6781823 Formation of TC-NER Pre-Incision Complex
R-OSA-6782135 Dual incision in TC-NER
R-OSA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-OSA-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-OSA-72086 mRNA Capping
R-OSA-73776 RNA Polymerase II Promoter Escape
R-OSA-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-OSA-75953 RNA Polymerase II Transcription Initiation
R-OSA-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance
R-OSA-77075 RNA Pol II CTD phosphorylation and interaction with CE

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-H1-1
Short name:
CycH1;1
Alternative name(s):
Cyclin-H-1
Short name:
CycH-1
Gene namesi
Name:CYCH1-1
Synonyms:CYCH-1
Ordered Locus Names:Os03g0737600, LOC_Os03g52750
ORF Names:OsJ_12494Imported, OSJNBa0084L17.8, OSJNBb0016H12.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002870501 – 330Cyclin-H1-1Add BLAST330

Proteomic databases

PaxDbiQ10D80
PRIDEiQ10D80

Expressioni

Tissue specificityi

Expressed in roots, nodes and internodes, and at lower levels in shoots and leaves. Expressed in the intercalary meristem of internodes and at lower levels in the elongation zone and differentiation zone.1 Publication

Developmental stagei

Expressed in the S and G2 phases.1 Publication

Inductioni

By submergence in the meristematic zone of internodes.1 Publication

Gene expression databases

ExpressionAtlasiQ10D80 differential
GenevisibleiQ10D80 OS

Interactioni

Subunit structurei

Interacts specifically with CDKD-1/CAK-R2.1 Publication

Protein-protein interaction databases

STRINGi39947.LOC_Os03g52750.1

Structurei

3D structure databases

ProteinModelPortaliQ10D80
SMRiQ10D80
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the cyclin family. Cyclin F subfamily.Curated

Phylogenomic databases

eggNOGiKOG2496 Eukaryota
COG5333 LUCA
HOGENOMiHOG000030045
InParanoidiQ10D80
KOiK06634
OMAiNYYLTIH
OrthoDBiEOG09360G29

Family and domain databases

CDDicd00043 CYCLIN, 1 hit
InterProiView protein in InterPro
IPR013763 Cyclin-like
IPR036915 Cyclin-like_sf
IPR031658 Cyclin_C_2
IPR006671 Cyclin_N
PfamiView protein in Pfam
PF16899 Cyclin_C_2, 1 hit
PF00134 Cyclin_N, 1 hit
SMARTiView protein in SMART
SM00385 CYCLIN, 1 hit
SUPFAMiSSF47954 SSF47954, 2 hits

Sequencei

Sequence statusi: Complete.

Q10D80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADFRTSTHR ERWIFQTNDL MDRWGAANQR ATETLVQYGT TRLKVDPVDG
60 70 80 90 100
SLSYPEPAPD HVVGSSGVKP LSCEEERLMR VFYEQKIQEV CSAFKFPHKI
110 120 130 140 150
QATAIIYFKR FYLQWSVMEH HPKHIMLTCI YSSCKVEENH VSAEELGKGI
160 170 180 190 200
QQDHQIILNN EMIVLKSLDF DLIVYAPYRS IEGFVDDMED FCRAGNGEHQ
210 220 230 240 250
RLQDLRQTAI SQVDKMMLTD APLLYTPGQL ALAALHKSND MHKILNFERY
260 270 280 290 300
LESVFSRQHS DCPIEQFVGS INMINYLVEQ LKIPTPKDMR HIDRKLKHCL
310 320 330
DPSSQDEHKK KEKKSKHKSK RAANEAQLDS
Length:330
Mass (Da):38,255
Last modified:August 22, 2006 - v1
Checksum:i795611030F074FA6
GO

Sequence cautioni

The sequence AAP03415 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAR07076 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB038234 mRNA Translation: BAB11694.1
AY387483 Genomic DNA Translation: AAR07076.1 Sequence problems.
AC118133 Genomic DNA Translation: AAP03415.1 Sequence problems.
DP000009 Genomic DNA Translation: ABF98764.1
AP008209 Genomic DNA Translation: BAF13117.1
AP014959 Genomic DNA Translation: BAS86279.1
CM000140 Genomic DNA Translation: EEE59890.1
AK101854 mRNA Translation: BAG95259.1
AK105468 mRNA Translation: BAG97262.1
RefSeqiXP_015628150.1, XM_015772664.1
UniGeneiOs.3905

Genome annotation databases

EnsemblPlantsiOs03t0737600-01; Os03t0737600-01; Os03g0737600
GeneIDi4334040
GrameneiOs03t0737600-01; Os03t0737600-01; Os03g0737600
KEGGiosa:4334040

Similar proteinsi

Entry informationi

Entry nameiCCH11_ORYSJ
AccessioniPrimary (citable) accession number: Q10D80
Secondary accession number(s): B7ESB2
, Q6TUB9, Q84R39, Q9FZN6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: August 22, 2006
Last modified: May 23, 2018
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

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