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Q10BU2 (GL37_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Germin-like protein 3-7
Alternative name(s):
Germin-like protein 7
Short name=OsGER7
Gene names
Name:GER7
Ordered Locus Names:Os03g0804500, LOC_Os03g58980
ORF Names:OsJ_012450, OSJNBb0015I02.7
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza ›

Protein attributes

Sequence length233 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Subunit structure

Oligomer (believed to be a pentamer but probably hexamer) By similarity.

Subcellular location

Secreted › extracellular space › apoplast By similarity.

Sequence similarities

Belongs to the germin family.

Sequence caution

The sequence AAC25777.1 differs from that shown. Reason: Erroneous initiation.

The sequence AAS07225.1 differs from that shown. Reason: Erroneous initiation.

The sequence EAZ28967.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Cellular componentApoplast
Secreted
   DomainSignal
   LigandManganese
Metal-binding
   PTMDisulfide bond
Glycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentapoplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionmanganese ion binding

Inferred from electronic annotation. Source: InterPro

nutrient reservoir activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3535 Potential
Chain36 – 233198Germin-like protein 3-7
PRO_0000365508

Sites

Metal binding1251Manganese By similarity
Metal binding1271Manganese By similarity
Metal binding1321Manganese By similarity
Metal binding1711Manganese By similarity

Amino acid modifications

Glycosylation1781N-linked (GlcNAc...) Potential
Disulfide bond44 ↔ 63 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q10BU2 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 1481E02C6623E980

FASTA23323,966
        10         20         30         40         50         60 
MSSSSSMECT GNMSAAPLLV LTVAVLAVLA STCAADPEPI QDFCVAVPRA GGEASPAYPG 

        70         80         90        100        110        120 
FPCKPASAVV SDDFFFAGLA AAGSTDNPFG ASLKPGNVEA FPALNTLGVA INRVDLAPGG 

       130        140        150        160        170        180 
VNPLHSHPRA AELVHVITGR MLVGFVSTAG KYYSKVVGEG ETFAIPRGLM HFQYNPGNAS 

       190        200        210        220        230 
ARAMTVFNSQ LPGVVPAATA LFGADPEIPD AVLAKSFQVD AEIIKLLKSK FKK

« Hide

References

« Hide 'large scale' references
[1]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[6]"The rice genome expresses at least six different genes for oxalate oxidase/germin-like proteins."
Membre N., Bernier F.
Plant Gene Register PGR98-021
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4-233.
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC135563 Genomic DNA. Translation: AAS07225.1. Different initiation.
DP000009 Genomic DNA. Translation: ABF99424.1.
AP008209 Genomic DNA. Translation: BAF13534.1.
CM000140 Genomic DNA. Translation: EAZ28967.1. Different initiation.
AK062698 mRNA. Translation: BAG88415.1.
AF072694 mRNA. Translation: AAC25777.1. Different initiation.
PIRT02923.
RefSeqNP_001051620.1. NM_001058155.1.
UniGeneOs.2219.

3D structure databases

ProteinModelPortalQ10BU2.
ModBaseSearch...

Proteomic databases

PRIDEQ10BU2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsLOC_Os03g58980.1; LOC_Os03g58980.1; LOC_Os03g58980.
GeneID4334487.
KEGGdosa:Os03t0804500-01.
osa:4334487.

Organism-specific databases

GrameneQ10BU2.

Phylogenomic databases

eggNOGNOG243634.
HOGENOMHOG000235000.
OMAGNVEAFP.
ProtClustDBCLSN2694426.

Gene expression databases

ArrayExpressQ10BU2.

Family and domain databases

Gene3D2.60.120.10. 1 hit.
InterProIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSPR00325. GERMIN.
SMARTSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMSSF51182. RmlC_like_cupin. 1 hit.
PROSITEPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGL37_ORYSJ
AccessionPrimary (citable) accession number: Q10BU2
Secondary accession number(s): O81385, Q75HJ7
Entry history
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: August 22, 2006
Last modified: April 3, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

SIMILARITY comments

Index of protein domains and families

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