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Protein

Probable ADP-ribosylation factor-binding protein C1F3.05

Gene

SPAC1F3.05

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

May play a role in the regulation of membrane traffic through the trans-Golgi network.By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ADP-ribosylation factor-binding protein C1F3.05
Gene namesi
ORF Names:SPAC1F3.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC1F3.05.
PomBaseiSPAC1F3.05.

Subcellular locationi

GO - Cellular componenti

  • clathrin adaptor complex Source: InterPro
  • cytosol Source: PomBase
  • Golgi apparatus Source: PomBase
  • nucleus Source: PomBase
  • trans-Golgi network Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 510510Probable ADP-ribosylation factor-binding protein C1F3.05PRO_0000212688Add
BLAST

Proteomic databases

MaxQBiQ10410.

PTM databases

SwissPalmiQ10410.

Interactioni

Protein-protein interaction databases

BioGridi277971. 2 interactions.
MINTiMINT-4699205.

Structurei

3D structure databases

ProteinModelPortaliQ10410.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini14 – 150137VHSPROSITE-ProRule annotationAdd
BLAST
Domaini177 – 301125GATPROSITE-ProRule annotationAdd
BLAST
Domaini391 – 510120GAEPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 GAE domain.PROSITE-ProRule annotation
Contains 1 GAT domain.PROSITE-ProRule annotation
Contains 1 VHS domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000209783.
InParanoidiQ10410.
OMAiHEIMNIT.
OrthoDBiEOG7GJ6PG.
PhylomeDBiQ10410.

Family and domain databases

Gene3Di1.20.58.160. 1 hit.
1.25.40.90. 1 hit.
2.60.40.1230. 1 hit.
InterProiIPR008152. Clathrin_a/b/g-adaptin_app_Ig.
IPR008153. Clathrin_g-adaptin_app.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR008942. ENTH_VHS.
IPR004152. GAT_dom.
IPR002014. VHS_dom.
[Graphical view]
PfamiPF02883. Alpha_adaptinC2. 1 hit.
PF00790. VHS. 1 hit.
[Graphical view]
SMARTiSM00809. Alpha_adaptinC2. 1 hit.
SM00288. VHS. 1 hit.
[Graphical view]
SUPFAMiSSF48464. SSF48464. 1 hit.
SSF49348. SSF49348. 1 hit.
PROSITEiPS50180. GAE. 1 hit.
PS50909. GAT. 1 hit.
PS50179. VHS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10410-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSSQTLSKY IDKATDQFNL EPNLALNIEI ADLINEKKGN TPREAALLIL
60 70 80 90 100
KRVNSANPTV SYLALHLLDI CVKNCGYPFH FQIASEEFLN GFVSRFPNHP
110 120 130 140 150
ISRMNKIQSK MLEMLEEWNY MLCKNNRHRE DFSRIHDIRE LMAFRGYKFP
160 170 180 190 200
AVDEDSIAVM KPNNSLRSAQ ELAREDLEAH KAKLQELLRR GTPMDLAEAN
210 220 230 240 250
ALMKVIAGYD EENTEDYSAL AAADLESIRS KALRVKQFLV NQTVSLEEGT
260 270 280 290 300
LADAVESLKV YQTKIARILR EENEDEYYVQ KLLSLNDLLI NVIEECSNSD
310 320 330 340 350
LIHSGTNVVS SQPNVVESHV PPSSNDTKQE SSLIDLMKLT EEPAVPSPSL
360 370 380 390 400
PTNVPANQSL SMLSSLSNSM SSTSNGALNS PSYSQAAIPN TNSSLTSILQ
410 420 430 440 450
SDSLMISTQL TSVQKSSGFA SYSVQFSNCS LTWPVSEVVF QVAVVKSLKL
460 470 480 490 500
QLLPHTGDAI IAPGKQNAAH EIMNITNIPA DASDLRIRWR VQWIIGTDHR
510
VEQGESHLPL
Length:510
Mass (Da):56,789
Last modified:October 1, 1996 - v1
Checksum:iD039C8976BFC8CE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA94623.1.
PIRiT38076.
RefSeqiNP_593008.1. NM_001018407.2.

Genome annotation databases

EnsemblFungiiSPAC1F3.05.1; SPAC1F3.05.1:pep; SPAC1F3.05.
GeneIDi2541469.
KEGGispo:SPAC1F3.05.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA94623.1.
PIRiT38076.
RefSeqiNP_593008.1. NM_001018407.2.

3D structure databases

ProteinModelPortaliQ10410.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277971. 2 interactions.
MINTiMINT-4699205.

PTM databases

SwissPalmiQ10410.

Proteomic databases

MaxQBiQ10410.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC1F3.05.1; SPAC1F3.05.1:pep; SPAC1F3.05.
GeneIDi2541469.
KEGGispo:SPAC1F3.05.

Organism-specific databases

EuPathDBiFungiDB:SPAC1F3.05.
PomBaseiSPAC1F3.05.

Phylogenomic databases

HOGENOMiHOG000209783.
InParanoidiQ10410.
OMAiHEIMNIT.
OrthoDBiEOG7GJ6PG.
PhylomeDBiQ10410.

Miscellaneous databases

NextBioi20802568.
PROiQ10410.

Family and domain databases

Gene3Di1.20.58.160. 1 hit.
1.25.40.90. 1 hit.
2.60.40.1230. 1 hit.
InterProiIPR008152. Clathrin_a/b/g-adaptin_app_Ig.
IPR008153. Clathrin_g-adaptin_app.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR008942. ENTH_VHS.
IPR004152. GAT_dom.
IPR002014. VHS_dom.
[Graphical view]
PfamiPF02883. Alpha_adaptinC2. 1 hit.
PF00790. VHS. 1 hit.
[Graphical view]
SMARTiSM00809. Alpha_adaptinC2. 1 hit.
SM00288. VHS. 1 hit.
[Graphical view]
SUPFAMiSSF48464. SSF48464. 1 hit.
SSF49348. SSF49348. 1 hit.
PROSITEiPS50180. GAE. 1 hit.
PS50909. GAT. 1 hit.
PS50179. VHS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiYD85_SCHPO
AccessioniPrimary (citable) accession number: Q10410
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: May 11, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.