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Q10356

- YDB3_SCHPO

UniProt

Q10356 - YDB3_SCHPO

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Protein

Uncharacterized protein C22E12.03c

Gene

SPAC22E12.03c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. glyoxalase III activity Source: PomBase

GO - Biological processi

  1. lactate biosynthetic process Source: GOC
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C22E12.03c
Gene namesi
ORF Names:SPAC22E12.03c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
ProteomesiUP000002485: Chromosome I

Organism-specific databases

PomBaseiSPAC22E12.03c.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: PomBase
  2. cytosol Source: PomBase
  3. nucleus Source: PomBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 191191Uncharacterized protein C22E12.03cPRO_0000157857Add
BLAST

Proteomic databases

MaxQBiQ10356.

Interactioni

Protein-protein interaction databases

BioGridi278266. 1 interaction.
MINTiMINT-4699059.
STRINGi4896.SPAC22E12.03c-1.

Structurei

Secondary structure

1
191
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 96Combined sources
Helixi14 – 2613Combined sources
Beta strandi31 – 388Combined sources
Beta strandi43 – 453Combined sources
Beta strandi51 – 533Combined sources
Beta strandi55 – 573Combined sources
Helixi58 – 603Combined sources
Helixi64 – 707Combined sources
Beta strandi72 – 765Combined sources
Helixi80 – 878Combined sources
Helixi90 – 9910Combined sources
Beta strandi106 – 1105Combined sources
Helixi111 – 1144Combined sources
Helixi115 – 1195Combined sources
Beta strandi125 – 1273Combined sources
Helixi131 – 1333Combined sources
Helixi134 – 1396Combined sources
Beta strandi147 – 1526Combined sources
Beta strandi155 – 1584Combined sources
Helixi161 – 1633Combined sources
Helixi164 – 17512Combined sources
Helixi178 – 18710Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4GE0X-ray1.45A/B/C/D1-191[»]
4GE3X-ray1.50A/B/C/D1-191[»]
4QYTX-ray1.05A/B/C/D1-191[»]
ProteinModelPortaliQ10356.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase C56 family.Curated

Phylogenomic databases

eggNOGiCOG0693.
HOGENOMiHOG000063194.
InParanoidiQ10356.
OMAiEATHENF.
OrthoDBiEOG7QNVZ1.
PhylomeDBiQ10356.

Family and domain databases

Gene3Di3.40.50.880. 1 hit.
InterProiIPR029062. Class_I_gatase-like.
IPR002818. ThiJ/PfpI.
[Graphical view]
PfamiPF01965. DJ-1_PfpI. 1 hit.
[Graphical view]
SUPFAMiSSF52317. SSF52317. 1 hit.

Sequencei

Sequence statusi: Complete.

Q10356-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVKVCLFVAD GTDEIEFSAP WGIFKRAEIP IDSVYVGENK DRLVKMSRDV
60 70 80 90 100
EMYANRSYKE IPSADDFAKQ YDIAIIPGGG LGAKTLSTTP FVQQVVKEFY
110 120 130 140 150
KKPNKWIGMI CAGTLTAKTS GLPNKQITGH PSVRGQLEEG GYKYLDQPVV
160 170 180 190
LEENLITSQG PGTAMLFGLK LLEQVASKDK YNAVYKSLSM P
Length:191
Mass (Da):21,078
Last modified:October 1, 1996 - v1
Checksum:i909817B8D554AB2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93890.1.
PIRiT38160.
RefSeqiNP_594829.1. NM_001020258.2.

Genome annotation databases

EnsemblFungiiSPAC22E12.03c.1; SPAC22E12.03c.1:pep; SPAC22E12.03c.
GeneIDi2541772.
KEGGispo:SPAC22E12.03c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93890.1 .
PIRi T38160.
RefSeqi NP_594829.1. NM_001020258.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4GE0 X-ray 1.45 A/B/C/D 1-191 [» ]
4GE3 X-ray 1.50 A/B/C/D 1-191 [» ]
4QYT X-ray 1.05 A/B/C/D 1-191 [» ]
ProteinModelPortali Q10356.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 278266. 1 interaction.
MINTi MINT-4699059.
STRINGi 4896.SPAC22E12.03c-1.

Proteomic databases

MaxQBi Q10356.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii SPAC22E12.03c.1 ; SPAC22E12.03c.1:pep ; SPAC22E12.03c .
GeneIDi 2541772.
KEGGi spo:SPAC22E12.03c.

Organism-specific databases

PomBasei SPAC22E12.03c.

Phylogenomic databases

eggNOGi COG0693.
HOGENOMi HOG000063194.
InParanoidi Q10356.
OMAi EATHENF.
OrthoDBi EOG7QNVZ1.
PhylomeDBi Q10356.

Miscellaneous databases

NextBioi 20802863.
PROi Q10356.

Family and domain databases

Gene3Di 3.40.50.880. 1 hit.
InterProi IPR029062. Class_I_gatase-like.
IPR002818. ThiJ/PfpI.
[Graphical view ]
Pfami PF01965. DJ-1_PfpI. 1 hit.
[Graphical view ]
SUPFAMi SSF52317. SSF52317. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiYDB3_SCHPO
AccessioniPrimary (citable) accession number: Q10356
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 26, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3