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Protein

Ribosome biogenesis protein rlp24

Gene

rlp24

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of nog1 to pre-60S particles (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein rlp24
Gene namesi
Name:rlp24
Synonyms:rpl2403
ORF Names:SPAC22E12.13c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC22E12.13c.
PomBaseiSPAC22E12.13c. rlp24.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: GO_Central
  • nucleolus Source: PomBase
  • nucleus Source: PomBase
  • preribosome, large subunit precursor Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192Ribosome biogenesis protein rlp24PRO_0000136908Add
BLAST

Proteomic databases

MaxQBiQ10353.

Interactioni

Subunit structurei

Associated with nucleolar and cytoplasmic pre-60S particles. At the end of biogenesis it dissociates from cytoplasmic pre-60S particles and is likely to be exchanged for its ribosomal homologue, rpl24 (By similarity).By similarity

Protein-protein interaction databases

MINTiMINT-4699030.

Structurei

3D structure databases

ProteinModelPortaliQ10353.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24e family.Curated

Phylogenomic databases

HOGENOMiHOG000184344.
InParanoidiQ10353.
KOiK02896.
OMAiNSSSAMQ.
OrthoDBiEOG718KQP.
PhylomeDBiQ10353.

Family and domain databases

Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR023441. Ribosomal_L24e_dom.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10353-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVHTCYFCS GPVYPGHGIM FVRNDSKVFR FCRSKCHKNF KMKRNPRKVA
60 70 80 90 100
WTKAYRKAHG KEMVYDTALA VTAARRNVPV RYDRNVIATT LNAMKRVSQV
110 120 130 140 150
HAKRERLFYK KRLAGKRAQE LQEAQKLIAQ NVPQFTEPEG EVETAEVQEP
160 170 180 190
QIVSDEEYTM EEEVAEPVKI PVLAKKRKNK KSRNSSSAMQ MD
Length:192
Mass (Da):22,280
Last modified:October 1, 1996 - v1
Checksum:iAE4BD226780373D3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93900.1.
PIRiT38170.
RefSeqiNP_594839.1. NM_001020268.2.

Genome annotation databases

EnsemblFungiiSPAC22E12.13c.1; SPAC22E12.13c.1:pep; SPAC22E12.13c.
GeneIDi2541855.
KEGGispo:SPAC22E12.13c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93900.1.
PIRiT38170.
RefSeqiNP_594839.1. NM_001020268.2.

3D structure databases

ProteinModelPortaliQ10353.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4699030.

Proteomic databases

MaxQBiQ10353.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC22E12.13c.1; SPAC22E12.13c.1:pep; SPAC22E12.13c.
GeneIDi2541855.
KEGGispo:SPAC22E12.13c.

Organism-specific databases

EuPathDBiFungiDB:SPAC22E12.13c.
PomBaseiSPAC22E12.13c. rlp24.

Phylogenomic databases

HOGENOMiHOG000184344.
InParanoidiQ10353.
KOiK02896.
OMAiNSSSAMQ.
OrthoDBiEOG718KQP.
PhylomeDBiQ10353.

Miscellaneous databases

PROiQ10353.

Family and domain databases

Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR023441. Ribosomal_L24e_dom.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiRLP24_SCHPO
AccessioniPrimary (citable) accession number: Q10353
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: July 6, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.