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Protein

GDT1-like protein C17G8.08c

Gene

SPAC17G8.08c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Protein family/group databases

TCDBi2.A.106.2.4. the ca(2+):h(+) antiporter-2 (caca2) family.

Names & Taxonomyi

Protein namesi
Recommended name:
GDT1-like protein C17G8.08c
Gene namesi
ORF Names:SPAC17G8.08c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC17G8.08c.
PomBaseiSPAC17G8.08c.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2721HelicalSequence analysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence analysisAdd
BLAST
Transmembranei89 – 10921HelicalSequence analysisAdd
BLAST
Transmembranei112 – 13221HelicalSequence analysisAdd
BLAST
Transmembranei194 – 21421HelicalSequence analysisAdd
BLAST
Transmembranei232 – 25221HelicalSequence analysisAdd
BLAST
Transmembranei267 – 28721HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • endoplasmic reticulum Source: PomBase
  • Golgi apparatus Source: PomBase
  • integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 287287GDT1-like protein C17G8.08cPRO_0000212468Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi278683. 9 interactions.
MINTiMINT-4698719.

Family & Domainsi

Sequence similaritiesi

Belongs to the GDT1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000224541.
InParanoidiQ10320.
OMAiPIFVQAF.
OrthoDBiEOG092C49P4.
PhylomeDBiQ10320.

Family and domain databases

InterProiIPR001727. Gdt1.
[Graphical view]
PANTHERiPTHR12608. PTHR12608. 1 hit.
PfamiPF01169. UPF0016. 2 hits.
[Graphical view]
PROSITEiPS01214. UPF0016. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10320-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNPIKWAII AVLLSTVVAK KIVGEGMADV SAIKHPEEVH PTNRDFLRSL
60 70 80 90 100
IFSISMIFGC EIGDKTFIVA ALLAFENSRL TVFAGSYSAL FIMTLLGVLL
110 120 130 140 150
GHAAPLLFPR KLTDILGGVL FVIFGIKMLM EAKEVMDSKE SMSDEFQNVR
160 170 180 190 200
NEIAANGPID QLLEEGAAPS HYTGHRSRSG HTLMSQLKSK GRNVMATLFS
210 220 230 240 250
PLFIKAFALT FVSEWGDRSQ IATIAMAASD NVYGVFMGAN VGHACCTALA
260 270 280
VISGKYISTK IKVHKVMFIG GILFIAFGLV YFYQGFF
Length:287
Mass (Da):31,302
Last modified:October 1, 1996 - v1
Checksum:i49148BC233D62947
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93691.1.
PIRiT37860.
RefSeqiNP_593731.1. NM_001019162.2.

Genome annotation databases

EnsemblFungiiSPAC17G8.08c.1; SPAC17G8.08c.1:pep; SPAC17G8.08c.
GeneIDi2542208.
KEGGispo:SPAC17G8.08c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93691.1.
PIRiT37860.
RefSeqiNP_593731.1. NM_001019162.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi278683. 9 interactions.
MINTiMINT-4698719.

Protein family/group databases

TCDBi2.A.106.2.4. the ca(2+):h(+) antiporter-2 (caca2) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC17G8.08c.1; SPAC17G8.08c.1:pep; SPAC17G8.08c.
GeneIDi2542208.
KEGGispo:SPAC17G8.08c.

Organism-specific databases

EuPathDBiFungiDB:SPAC17G8.08c.
PomBaseiSPAC17G8.08c.

Phylogenomic databases

HOGENOMiHOG000224541.
InParanoidiQ10320.
OMAiPIFVQAF.
OrthoDBiEOG092C49P4.
PhylomeDBiQ10320.

Miscellaneous databases

PROiQ10320.

Family and domain databases

InterProiIPR001727. Gdt1.
[Graphical view]
PANTHERiPTHR12608. PTHR12608. 1 hit.
PfamiPF01169. UPF0016. 2 hits.
[Graphical view]
PROSITEiPS01214. UPF0016. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYD68_SCHPO
AccessioniPrimary (citable) accession number: Q10320
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: September 7, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.