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Protein

Transcription factor gaf1

Gene

gaf1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Transcriptional activator.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri635 – 659GATA-typePROSITE-ProRule annotationAdd BLAST25

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor gaf1
Short name:
Gaf-1
Gene namesi
Name:gaf1
ORF Names:SPCC1902.01, SPCC417.01c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome III

Organism-specific databases

EuPathDBiFungiDB:SPCC1902.01
PomBaseiSPCC1902.01 gaf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000834751 – 855Transcription factor gaf1Add BLAST855

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei150Phosphoserine1 Publication1
Modified residuei727Phosphoserine1 Publication1
Modified residuei729Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ10280
PaxDbiQ10280
PRIDEiQ10280

PTM databases

iPTMnetiQ10280

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi275597, 2 interactors
STRINGi4896.SPCC1902.01.1

Structurei

3D structure databases

ProteinModelPortaliQ10280
SMRiQ10280
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri635 – 659GATA-typePROSITE-ProRule annotationAdd BLAST25

Keywords - Domaini

Zinc-finger

Phylogenomic databases

InParanoidiQ10280
KOiK09184
OrthoDBiEOG092C43RR
PhylomeDBiQ10280

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR013860 DUF1752_fun
IPR000679 Znf_GATA
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF08550 DUF1752, 1 hit
PF00320 GATA, 1 hit
PRINTSiPR00619 GATAZNFINGER
SMARTiView protein in SMART
SM00401 ZnF_GATA, 1 hit
PROSITEiView protein in PROSITE
PS00344 GATA_ZN_FINGER_1, 1 hit
PS50114 GATA_ZN_FINGER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q10280-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLKFSNFFK EAEHPALVKK FDKSTTDESS SKEDYSTMSD LWKMFSKAKS
60 70 80 90 100
ELSNGRRVEN LTWRLMSINL QKNLTPNGDS NTLTPDTFSD PTAPSSAQSV
110 120 130 140 150
PPTSSAETTA DNSDTEMKLN PIPAYSVPAD TTGSSLMEFN YIQRRVRKTS
160 170 180 190 200
FDESTAKSKK RSIADSHFPD PNAMQRPHDL ESQPFSYPKI HASNSFNFVK
210 220 230 240 250
RDIDSSNFSN LDASALPISP PSDFFSVHSH NLPNAPPSIP ANSNNSASPN
260 270 280 290 300
QRIKASPKHA DTDVLGLDFD MTPSEPSSFP ENGGFPSFVD ANTHEQTLFP
310 320 330 340 350
SSATNSFSFE HGSAGFPIPG SVPSTSYHAN TASEDGFSSS YNSQGLFGIS
360 370 380 390 400
SPLSSGVTPN QSFFPDVSGN NIFDVSRNNH EVSSPLIQSP GSYVSMPSIN
410 420 430 440 450
MVSSLPISAP VPNSNSQFPR RPNTFRTNSS KSVGQGSSGV DSNQENAESF
460 470 480 490 500
NPSISSHNSA EWASGETTGH SSNSPLPGSD MFSPQFMRVG TAMGVAPVRS
510 520 530 540 550
NSSNNFGQNF FHQTSPQFSA VPHRKVSAQD TNLMGSSPGM YNHMPYLNRA
560 570 580 590 600
TSANSITSPG VLPEGMAASL KKRTTNTAAT PQAALPTTLD TKKDRSVSFN
610 620 630 640 650
INKNAEKPTV SNAAEDKKGD ANTRRANATN PTPTCTNCQT RTTPLWRRSP
660 670 680 690 700
DGQPLCNACG LFMKINGVVR PLSLKTDVIK KRNRGVGTSA TPKQSGGRKG
710 720 730 740 750
STRKSSSKSS SAKSTAADMK PKADSKSISP GFVGGNQSLS SERIPLDPSM
760 770 780 790 800
RSPLQQQSSE NESKSQSMLS ANNLNAGVND FGLGFSEGLG SAHLDSNDSS
810 820 830 840 850
MVQGKNDFAP VVDSPLFDAF DTDLGMSSVA ESHTMNMDPS DLSRVSKSWD

WYSVM
Length:855
Mass (Da):91,777
Last modified:December 1, 2000 - v2
Checksum:i3D932F83D2DE6774
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA Translation: CAB40003.1
L31601 Genomic DNA Translation: AAC35593.1
PIRiT41336
RefSeqiNP_588278.2, NM_001023268.2

Genome annotation databases

EnsemblFungiiSPCC1902.01.1; SPCC1902.01.1:pep; SPCC1902.01
GeneIDi2539024
KEGGispo:SPCC1902.01

Entry informationi

Entry nameiGAF1_SCHPO
AccessioniPrimary (citable) accession number: Q10280
Secondary accession number(s): O94482, Q9USK9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: December 1, 2000
Last modified: May 23, 2018
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names

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