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Protein

Transcription factor gaf1

Gene

gaf1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Transcriptional activator.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri635 – 65925GATA-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor gaf1
Short name:
Gaf-1
Gene namesi
Name:gaf1
ORF Names:SPCC1902.01, SPCC417.01c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome III

Organism-specific databases

EuPathDBiFungiDB:SPCC1902.01.
PomBaseiSPCC1902.01. gaf1.

Subcellular locationi

GO - Cellular componenti

  • cell division site Source: PomBase
  • cytosol Source: PomBase
  • nucleus Source: GO_Central
  • transcription factor complex Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 855855Transcription factor gaf1PRO_0000083475Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei150 – 1501Phosphoserine1 Publication
Modified residuei727 – 7271Phosphoserine1 Publication
Modified residuei729 – 7291Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ10280.

PTM databases

iPTMnetiQ10280.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi275597. 2 interactions.
MINTiMINT-4698373.

Structurei

3D structure databases

ProteinModelPortaliQ10280.
SMRiQ10280. Positions 630-689.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 GATA-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri635 – 65925GATA-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

InParanoidiQ10280.
KOiK09184.
OrthoDBiEOG092C43RR.
PhylomeDBiQ10280.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiIPR013860. DUF1752_fun.
IPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF08550. DUF1752. 1 hit.
PF00320. GATA. 1 hit.
[Graphical view]
PRINTSiPR00619. GATAZNFINGER.
SMARTiSM00401. ZnF_GATA. 1 hit.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 1 hit.
PS50114. GATA_ZN_FINGER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10280-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLKFSNFFK EAEHPALVKK FDKSTTDESS SKEDYSTMSD LWKMFSKAKS
60 70 80 90 100
ELSNGRRVEN LTWRLMSINL QKNLTPNGDS NTLTPDTFSD PTAPSSAQSV
110 120 130 140 150
PPTSSAETTA DNSDTEMKLN PIPAYSVPAD TTGSSLMEFN YIQRRVRKTS
160 170 180 190 200
FDESTAKSKK RSIADSHFPD PNAMQRPHDL ESQPFSYPKI HASNSFNFVK
210 220 230 240 250
RDIDSSNFSN LDASALPISP PSDFFSVHSH NLPNAPPSIP ANSNNSASPN
260 270 280 290 300
QRIKASPKHA DTDVLGLDFD MTPSEPSSFP ENGGFPSFVD ANTHEQTLFP
310 320 330 340 350
SSATNSFSFE HGSAGFPIPG SVPSTSYHAN TASEDGFSSS YNSQGLFGIS
360 370 380 390 400
SPLSSGVTPN QSFFPDVSGN NIFDVSRNNH EVSSPLIQSP GSYVSMPSIN
410 420 430 440 450
MVSSLPISAP VPNSNSQFPR RPNTFRTNSS KSVGQGSSGV DSNQENAESF
460 470 480 490 500
NPSISSHNSA EWASGETTGH SSNSPLPGSD MFSPQFMRVG TAMGVAPVRS
510 520 530 540 550
NSSNNFGQNF FHQTSPQFSA VPHRKVSAQD TNLMGSSPGM YNHMPYLNRA
560 570 580 590 600
TSANSITSPG VLPEGMAASL KKRTTNTAAT PQAALPTTLD TKKDRSVSFN
610 620 630 640 650
INKNAEKPTV SNAAEDKKGD ANTRRANATN PTPTCTNCQT RTTPLWRRSP
660 670 680 690 700
DGQPLCNACG LFMKINGVVR PLSLKTDVIK KRNRGVGTSA TPKQSGGRKG
710 720 730 740 750
STRKSSSKSS SAKSTAADMK PKADSKSISP GFVGGNQSLS SERIPLDPSM
760 770 780 790 800
RSPLQQQSSE NESKSQSMLS ANNLNAGVND FGLGFSEGLG SAHLDSNDSS
810 820 830 840 850
MVQGKNDFAP VVDSPLFDAF DTDLGMSSVA ESHTMNMDPS DLSRVSKSWD

WYSVM
Length:855
Mass (Da):91,777
Last modified:December 1, 2000 - v2
Checksum:i3D932F83D2DE6774
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA. Translation: CAB40003.1.
L31601 Genomic DNA. Translation: AAC35593.1.
PIRiT41336.
RefSeqiNP_588278.2. NM_001023268.2.

Genome annotation databases

EnsemblFungiiSPCC1902.01.1; SPCC1902.01.1:pep; SPCC1902.01.
GeneIDi2539024.
KEGGispo:SPCC1902.01.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA. Translation: CAB40003.1.
L31601 Genomic DNA. Translation: AAC35593.1.
PIRiT41336.
RefSeqiNP_588278.2. NM_001023268.2.

3D structure databases

ProteinModelPortaliQ10280.
SMRiQ10280. Positions 630-689.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi275597. 2 interactions.
MINTiMINT-4698373.

PTM databases

iPTMnetiQ10280.

Proteomic databases

MaxQBiQ10280.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPCC1902.01.1; SPCC1902.01.1:pep; SPCC1902.01.
GeneIDi2539024.
KEGGispo:SPCC1902.01.

Organism-specific databases

EuPathDBiFungiDB:SPCC1902.01.
PomBaseiSPCC1902.01. gaf1.

Phylogenomic databases

InParanoidiQ10280.
KOiK09184.
OrthoDBiEOG092C43RR.
PhylomeDBiQ10280.

Miscellaneous databases

PROiQ10280.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiIPR013860. DUF1752_fun.
IPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF08550. DUF1752. 1 hit.
PF00320. GATA. 1 hit.
[Graphical view]
PRINTSiPR00619. GATAZNFINGER.
SMARTiSM00401. ZnF_GATA. 1 hit.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 1 hit.
PS50114. GATA_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGAF1_SCHPO
AccessioniPrimary (citable) accession number: Q10280
Secondary accession number(s): O94482, Q9USK9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: December 1, 2000
Last modified: September 7, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.